Stem-loop sequence hsa-mir-362

Accession

MI0000762

Symbol

HGNC:MIR362

Description

Homo sapiens miR-362 stem-loop

Gene family

MIPF0000209; mir-362

Stem-loop

c             acc        -a ug  a 
 uugaauccuugga   uaggugug  g  cu u
 |||||||||||||   ||||||||  |  || u
 aacuuaggaacuu   auccacac  c  ga u
a             ---        aa gu  c 

Deep sequencing

1425 reads, 32 experiments

Genome context

• Coordinates (GRCh37.p5): chrX: 49773572-49773636 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000056542 ; CLCN5-001; intron 3

  OTTHUMT00000056543 ; CLCN5-002; intron 3

  OTTHUMT00000109349 ; CLCN5-005; intron 3

  OTTHUMT00000056542 ; CLCN5-001; intron 3

  OTTHUMT00000056543 ; CLCN5-002; intron 3

  OTTHUMT00000109349 ; CLCN5-005; intron 3

  OTTHUMT00000056542 ; CLCN5-001; intron 3

  OTTHUMT00000056543 ; CLCN5-002; intron 3

  OTTHUMT00000109349 ; CLCN5-005; intron 3

  ENST00000376088 ; CLCN5-001; intron 3

  ENST00000376091 ; CLCN5-002; intron 3

  ENST00000482218 ; CLCN5-005; intron 3

  ENST00000450422 ; CLCN5-201; intron 3

  ENST00000376088 ; CLCN5-001; intron 3

  ENST00000376091 ; CLCN5-002; intron 3

  ENST00000482218 ; CLCN5-005; intron 3

  ENST00000450422 ; CLCN5-201; intron 3

  ENST00000376088 ; CLCN5-001; intron 3

  ENST00000376091 ; CLCN5-002; intron 3

  ENST00000482218 ; CLCN5-005; intron 3

Clustered miRNAs

< 10kb from hsa-mir-362

• hsa-mir-532: chrX: 49767754-49767844 [+]
• hsa-mir-188: chrX: 49768109-49768194 [+]
• hsa-mir-500a: chrX: 49773039-49773122 [+]
• hsa-mir-362: chrX: 49773572-49773636 [+]
• hsa-mir-501: chrX: 49774330-49774413 [+]
• hsa-mir-500b: chrX: 49775280-49775358 [+]
• hsa-mir-660: chrX: 49777849-49777945 [+]
• hsa-mir-502: chrX: 49779206-49779291 [+]

Database links

• EMBL: AY882270;AY882270
• ENTREZGENE: 574030;MIR362
• HGNC: 32022;MIR362

Mature sequence hsa-miR-362-5p

• Accession: MIMAT0000705
• Previous IDs: hsa-miR-362
• Sequence: 5 - aauccuuggaaccuaggugugagu - 28
• Deep sequencing: 781 reads, 26 experiments
• Evidence: experimental; array-cloned [1], cloned [2-3]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-362-5p
  • MICRORNA.ORG:hsa-miR-362-5p
  • MIRDB:hsa-miR-362-5p
  • RNA22-HSA:hsa-miR-362-5p
  • TARGETMINER:hsa-miR-362-5p
  • TARGETSCAN-VERT:hsa-miR-362-5p

Mature sequence hsa-miR-362-3p

• Accession: MIMAT0004683
• Sequence: 42 - aacacaccuauucaaggauuca - 63
• Deep sequencing: 644 reads, 22 experiments
• Evidence: experimental; cloned [3]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-362-3p
  • MICRORNA.ORG:hsa-miR-362-3p
  • MIRDB:hsa-miR-362-3p
  • RNA22-HSA:hsa-miR-362-3p
  • TARGETMINER:hsa-miR-362-3p
  • TARGETSCAN-VERT:hsa-miR-362-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).