Stem-loop sequence hsa-mir-29c

Accession

MI0000735 (change log)

Symbol

HGNC:MIR29C

Description

Homo sapiens miR-29c stem-loop

Gene family

MIPF0000009; mir-29

Literature search

512 open access papers mention hsa-mir-29c
(2592 sentences)

Stem-loop

   a         -  ggc           ucc       ---     u 
5'  ucucuuaca ca   ugaccgauuuc   ugguguu   cagag c
    ||||||||| ||   |||||||||||   |||||||   ||||| u
3'  gggggaugu gu   auuggcuaaag   accacga   guuuu g
   a         a  ---           uuu       ucu     u 

Deep sequencing

4280347 reads, 1.12e+04 reads per million, 159 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr1: 207801852-207801939 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000382528 ; CR1-011; intron 13

  OTTHUMT00000382524 ; CR1-007; intron 37

  OTTHUMT00000088499 ; CR1-002; intron 37

  OTTHUMT00000088500 ; CR1-003; intron 37

  OTTHUMT00000088335 ; CR1-001; intron 37

  OTTHUMT00000382527 ; CR1-012; intron 45

  ENST00000529814 ; CR1-011; intron 13

  ENST00000367052 ; CR1-007; intron 37

  ENST00000367051 ; CR1-002; intron 37

  ENST00000367053 ; CR1-003; intron 37

  ENST00000400960 ; CR1-001; intron 37

  ENST00000367049 ; CR1-012; intron 45

Clustered miRNAs

< 10kb from hsa-mir-29c

• hsa-mir-29b-2: chr1: 207802443-207802523 [-]
• hsa-mir-29c: chr1: 207801852-207801939 [-]

Database links

• EntrezGene:MIR29C
• HGNC:MIR29C
• RNAcentral:URS000075B799_9606
• miRBase Tracker:MI0000735

Mature sequence hsa-miR-29c-5p

• Accession: MIMAT0004673
• Previous IDs: hsa-miR-29c*
• Sequence: 16 - ugaccgauuucuccugguguuc - 37
• Deep sequencing: 45474 reads, 152 experiments
• Evidence: experimental; cloned [3]
• Database links:
  • RNAcentral:URS0000497496_9606
• Predicted targets:
  • TargetMiner:hsa-miR-29c-5p
  • TargetScanVert:hsa-miR-29c-5p
  • miRDB:hsa-miR-29c-5p
  • microrna.org:hsa-miR-29c-5p

Mature sequence hsa-miR-29c-3p

• Accession: MIMAT0000681
• Previous IDs: hsa-miR-29c
• Sequence: 54 - uagcaccauuugaaaucgguua - 75
• Deep sequencing: 4234837 reads, 159 experiments
• Evidence: experimental; cloned [2-4]
• Database links:
  • RNAcentral:URS0000272A3D_9606
• Predicted targets:
  • TargetMiner:hsa-miR-29c-3p
  • TargetScanVert:hsa-miR-29c-3p
  • miRDB:hsa-miR-29c-3p
  • microrna.org:hsa-miR-29c-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:12554860 "Numerous microRNPs in neuronal cells containing novel microRNAs" Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G RNA. 9:180-186(2003).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:17616659 "Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).