Stem-loop sequence mmu-mir-9-3

AccessionMI0000721 (change log)
Symbol MGI:Mir9-3
DescriptionMus musculus miR-9-3 stem-loop
Gene family MIPF0000014; mir-9
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-9/mir-79_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

The miR-9 microRNA (homologous to miR-79), is a short non-coding RNA gene involved in gene regulation. The mature ~21nt miRNAs are processed from hairpin precursor sequences by the Dicer enzyme. The dominant mature miRNA sequence is processed from the 5' arm of the mir-9 precursor, and from the 3' arm of the mir-79 precursor. The mature products are thought to have regulatory roles through complementarity to mRNA. In vertebrates, miR-9 is highly expressed in the brain, and is suggested to regulate neuronal differentiation. A number of specific targets of miR-9 have been proposed, including the transcription factor REST and its partner CoREST.

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   g    cc       -  c               g     gu  ca 
5'  gagg  cguuucu cu uuugguuaucuagcu uauga  gc  c
    ||||  ||||||| || ||||||||||||||| |||||  ||   
3'  cucu  guaaaga ga aagccaauagaucga auacu  cg  a
   a    ca       u  -               a     gc  ag 
Get sequence
Deep sequencing
1166344 reads, 1.09e+04 reads per million, 73 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr7: 79505264-79505353 [+]
OTTMUST00000113394 ; RP23-207N5.1-003; intron 1
OTTMUST00000113395 ; RP23-207N5.1-004; intron 1
OTTMUST00000113396 ; RP23-207N5.1-001; intron 1
OTTMUST00000113397 ; RP23-207N5.1-005; intron 1
ENSMUST00000182937 ; AI854517-005; intron 1
ENSMUST00000181511 ; AI854517-001; intron 1
ENSMUST00000183043 ; AI854517-004; intron 1
ENSMUST00000182495 ; AI854517-003; intron 1
Clustered miRNAs
< 10kb from mmu-mir-9-3
mmu-mir-9-3chr7: 79505264-79505353 [+]
mmu-mir-9b-3chr7: 79505279-79505336 [-]
Database links

Mature sequence mmu-miR-9-5p

Accession MIMAT0000142
Previous IDsmmu-miR-9

16 - 


 - 38

Get sequence
Deep sequencing3192711 reads, 72 experiments
Evidence experimental; cloned [1-2,4], Illumina [5-6]
Database links
Predicted targets

Mature sequence mmu-miR-9-3p

Accession MIMAT0000143
Previous IDsmmu-miR-9*

55 - 


 - 76

Get sequence
Deep sequencing306503 reads, 56 experiments
Evidence experimental; cloned [1,4], Illumina [5-6]
Database links
Predicted targets


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PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).