Stem-loop sequence osa-MIR171a

Accession MI0000680
Previous IDs osa-MIR171
Description Oryza sativa miR171a stem-loop
Gene family MIPF0000030; MIR171_1
Stem-loop 
---    a  gc          a         c   g           ag 
   ggaa ga  gauauuggug gguucaauc gau auugguuuuac  c
   |||| ||  |||||||||| ||||||||| ||| |||||||||||  a
   ccuu cu  cuauaaccgc ccgaguuag cua ugacuaaaaug  g
ucu    -  --          g         u   -           gu
Get sequence
Deep sequencing
2267 reads, 4 experiments
Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr6: 25891132-25891227 [+]
intergenic

Mature sequence osa-miR171a

Accession MIMAT0000645
Sequence

67 -  

ugauugagccgcgccaauauc

 - 87

Get sequence
Deep sequencing 2174 reads, 4 experiments
Evidence by similarity; MI0000214

References

1
PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).