Stem-loop sequence mmu-mir-135b

Accession

MI0000646 (change log)

Symbol

MGI:Mir135b

Description

Mus musculus miR-135b stem-loop

Gene family

MIPF0000028; mir-135

Literature search

79 open access papers mention mmu-mir-135b
(450 sentences)

Stem-loop

   ------c     --                   cau          uug ug 
5'        gcucu  gcuguggccuauggcuuuu   uccuauguga   c  c
          |||||  |||||||||||||||||||   ||||||||||   |   
3'        cgggg  ugacaucggguaccgaaaa   gggauguacu   g  u
   ccucgaa     ag                   -uc          caa cc 

Deep sequencing

171011 reads, 1.64e+03 reads per million, 77 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr1: 132198088-132198184 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000112357 ; Lemd1-201; intron 1

Database links

• EntrezGene:Mir135b
• MGI:Mir135b
• RNAcentral:URS000075CCA1_10090
• miRBase Tracker:MI0000646

Mature sequence mmu-miR-135b-5p

• Accession: MIMAT0000612
• Previous IDs: mmu-miR-135b
• Sequence: 16 - uauggcuuuucauuccuauguga - 38
• Deep sequencing: 170182 reads, 76 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS000001C659_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-135b-5p
  • miRDB:mmu-miR-135b-5p
  • microrna.org:mmu-miR-135b-5p

Mature sequence mmu-miR-135b-3p

• Accession: MIMAT0017044
• Previous IDs: mmu-miR-135b*
• Sequence: 55 - auguagggcuaaaagccauggg - 76
• Deep sequencing: 819 reads, 38 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS0000488C83_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-135b-3p
  • miRDB:mmu-miR-135b-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).