Stem-loop sequence rno-mir-346

AccessionMI0000633 (change log)
DescriptionRattus norvegicus miR-346 stem-loop
Gene family MIPF0000188; mir-346
   -----------     g ug    u    cu    g   g        u  guug 
5'            ucugu u  ggca cugu  gccu agu ccugccuc cu    c
              ||||| |  |||| ||||  |||| ||| |||||||| ||     
3'            agacg g  ccgu gacg  cggg ucg ggacggag ga    u
   cuuccucgucg     - gu    c    uc    -   g        -  aguc 
Get sequence
Deep sequencing
1021 reads, 0 reads per million, 19 experiments
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Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1]. The sequence reported in [1] contains two 3' terminal A residues, which conflict with the precursor sequence shown here.

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr16: 11250054-11250151 [+]
Database links

Mature sequence rno-miR-346

Accession MIMAT0000596

16 - 


 - 38

Get sequence
Deep sequencing1005 reads, 16 experiments
Evidence experimental; cloned [1-2], SOLiD [3]
Predicted targets


PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).