Stem-loop sequence mmu-mir-340

Accession

MI0000623

Symbol

MGI:Mir340

Description

Mus musculus miR-340 stem-loop

Gene family

MIPF0000191; mir-340

Stem-loop

caauu     u      au       -caa      u    g     ug 
     guacu ggugug  uauaaag    ugagac gauu ucaua  u
     ||||| ||||||  |||||||    |||||| |||| |||||  c
     uaugg ccauac  auauuuc    acucug cuag ggugu  g
-auuc     u      cg       auug      c    -     uu 

Deep sequencing

488812 reads, 97 experiments

Genome context

• Coordinates (GRCm38): chr11: 50069702-50069799 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000012381 ; Rnf130-001; intron 2

  OTTMUST00000012382 ; Rnf130-002; intron 2

  ENSMUST00000102776 ; Rnf130-001; intron 2

  ENSMUST00000054684 ; Rnf130-002; intron 2

Database links

• ENTREZGENE: 723845;Mir340
• MGI: 3619355;Mir340

Mature sequence mmu-miR-340-5p

• Accession: MIMAT0004651
• Sequence: 19 - uuauaaagcaaugagacugauu - 40
• Deep sequencing: 304280 reads, 82 experiments
• Evidence: experimental; cloned [1], Solexa [2-3]
• Validated targets:
  • TARBASE:mmu-miR-340-5p
• Predicted targets:
  • DIANA-MICROT:mmu-miR-340-5p
  • MICRORNA.ORG:mmu-miR-340-5p
  • MIRDB:mmu-miR-340-5p
  • RNA22-MMU:mmu-miR-340-5p
  • TARGETSCAN-VERT:mmu-miR-340-5p

Mature sequence mmu-miR-340-3p

• Accession: MIMAT0000586
• Previous IDs: mmu-miR-340
• Sequence: 61 - uccgucucaguuacuuuauagc - 82
• Deep sequencing: 1098 reads, 63 experiments
• Evidence: experimental; cloned [1], Solexa [2-3]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-340-3p
  • MICRORNA.ORG:mmu-miR-340-3p
  • MIRDB:mmu-miR-340-3p
  • RNA22-MMU:mmu-miR-340-3p
  • TARGETSCAN-VERT:mmu-miR-340-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).