Stem-loop sequence mmu-mir-330

Accession MI0000607
Symbol MGI:Mir330
Description Mus musculus miR-330 stem-loop
Gene family MIPF0000200; mir-330
Stem-loop 
gacccuuu   -  u u           --    -    u   ag    uucaa 
        ggc ga c cugccucucug  ggcc ugug cuu  gcuc     g
        ||| || | |||||||||||  |||| |||| |||  ||||     a
        ucg cu g gauggagagac  ccgg acac gaa  cgag     u
-------c   u  c c           gu    g    -   -a    caacc
Get sequence
Deep sequencing
45575 reads, 94 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr7: 19181465-19181562 [+]
sense
OTTMUST00000072389 ; Eml2-007; exon 1
OTTMUST00000072388 ; Eml2-006; intron 1
OTTMUST00000072387 ; Eml2-005; intron 1
OTTMUST00000072385 ; Eml2-003; intron 1
OTTMUST00000072386 ; Eml2-004; intron 1
OTTMUST00000072384 ; Eml2-002; intron 1
OTTMUST00000072383 ; Eml2-001; intron 4
ENSMUST00000141792 ; Eml2-007; exon 1
ENSMUST00000141718 ; Eml2-006; intron 1
ENSMUST00000144054 ; Eml2-005; intron 1
ENSMUST00000048502 ; Eml2-003; intron 1
ENSMUST00000148246 ; Eml2-004; intron 1
ENSMUST00000120595 ; Eml2-002; intron 1
ENSMUST00000117338 ; Eml2-001; intron 4
Database links

Mature sequence mmu-miR-330-5p

Accession MIMAT0004642
Previous IDs mmu-miR-330
Sequence

22 -  

ucucugggccugugucuuaggc

 - 43

Get sequence
Deep sequencing 8967 reads, 75 experiments
Evidence experimental; cloned [1-2], Solexa [2-3]
Predicted targets

Mature sequence mmu-miR-330-3p

Accession MIMAT0000569
Previous IDs mmu-miR-330;mmu-miR-330*
Sequence

61 -  

gcaaagcacagggccugcagaga

 - 83

Get sequence
Deep sequencing 28324 reads, 79 experiments
Evidence experimental; cloned [1-2], Solexa [2-3]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).