Stem-loop sequence mmu-mir-326

Accession

MI0000598

Symbol

MGI:Mir326

Description

Mus musculus miR-326 stem-loop

Gene family

MIPF0000143; mir-326

Stem-loop

cuc        guu          c       uugu  a     guuau 
   aucugucu   gggcuggggg agggccu    ga ggcgg     g
   ||||||||   |||||||||| |||||||    || |||||      
   uagacgga   ccugaccucc ucccggg    cu ccgcu     c
auu        -gc          u       ---u  -     agacu 

Deep sequencing

16919 reads, 95 experiments

Genome context

• Coordinates (GRCm38): chr7: 99552269-99552363 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000085878 ; Arrb1-004; intron 1

  OTTMUST00000085880 ; Arrb1-006; intron 1

  OTTMUST00000085876 ; Arrb1-002; intron 1

  OTTMUST00000085875 ; Arrb1-001; intron 1

  ENSMUST00000179755 ; Arrb1-201; intron 1

  ENSMUST00000161525 ; Arrb1-004; intron 1

  ENSMUST00000162404 ; Arrb1-006; intron 1

  ENSMUST00000032995 ; Arrb1-002; intron 1

  ENSMUST00000098266 ; Arrb1-001; intron 1

Database links

• ENTREZGENE: 723840;Mir326
• MGI: 3619338;Mir326

Mature sequence mmu-miR-326-5p

• Accession: MIMAT0017027
• Previous IDs: mmu-miR-326*
• Sequence: 20 - gggggcagggccuuugugaaggcg - 43
• Deep sequencing: 71 reads, 25 experiments
• Evidence: experimental; Solexa [3]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-326-5p
  • MIRDB:mmu-miR-326-5p
  • RNA22-MMU:mmu-miR-326-5p

Mature sequence mmu-miR-326-3p

• Accession: MIMAT0000559
• Previous IDs: mmu-miR-326
• Sequence: 60 - ccucugggcccuuccuccagu - 80
• Deep sequencing: 16270 reads, 77 experiments
• Evidence: experimental; cloned [1], Solexa [2-3]
• Validated targets:
  • TARBASE:mmu-miR-326-3p
• Predicted targets:
  • DIANA-MICROT:mmu-miR-326-3p
  • MICRORNA.ORG:mmu-miR-326-3p
  • MIRDB:mmu-miR-326-3p
  • RNA22-MMU:mmu-miR-326-3p
  • TARGETSCAN-VERT:mmu-miR-326

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).