Stem-loop sequence mmu-mir-16-1

AccessionMI0000565 (change log)
Symbol MGI:Mir16-1
DescriptionMus musculus miR-16-1 stem-loop
Gene family MIPF0000006; mir-15
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-16_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

The miR-16 microRNA precursor family is a group of related small non-coding RNA genes that regulates gene expression. miR-16, miR-15, mir-195 and miR-457 are related microRNA precursor sequences from the mir-15 gene family. This microRNA family appears to be vertebrate specific and its members have been predicted or experimentally validated in a wide range of vertebrate species (MIPF0000006).

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   a       gg   c          -  a        c u   gauu 
5'  ugucagc  ugc uuagcagcac gu aauauugg g uaa    c
    |||||||  ||| |||||||||| || |||||||| | |||     
3'  acgguug  aug agucgucgug ca uuaugacc c auu    u
   a       ga   a          u  g        u c   aaag 
Get sequence
Deep sequencing
634483 reads, 4.23e+03 reads per million, 76 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr14: 61631880-61631972 [-]
OTTMUST00000113484 ; Dleu2-014; intron 3
OTTMUST00000113481 ; Dleu2-001; intron 4
OTTMUST00000113482 ; Dleu2-004; intron 4
OTTMUST00000113483 ; Dleu2-013; intron 4
OTTMUST00000113485 ; Dleu2-006; intron 4
OTTMUST00000113487 ; Dleu2-002; intron 4
OTTMUST00000113488 ; Dleu2-015; intron 4
OTTMUST00000113490 ; Dleu2-003; intron 4
ENSMUST00000183054 ; Dleu2-014; intron 3
ENSMUST00000182768 ; Dleu2-001; intron 4
ENSMUST00000182259 ; Dleu2-004; intron 4
ENSMUST00000183066 ; Dleu2-013; intron 4
ENSMUST00000182325 ; Dleu2-006; intron 4
ENSMUST00000180377 ; Dleu2-002; intron 4
ENSMUST00000183079 ; Dleu2-015; intron 4
ENSMUST00000183245 ; Dleu2-003; intron 4
Clustered miRNAs
< 10kb from mmu-mir-16-1
mmu-mir-15achr14: 61632027-61632110 [-]
mmu-mir-16-1chr14: 61631880-61631972 [-]
Database links

Mature sequence mmu-miR-16-5p

Accession MIMAT0000527
Previous IDsmmu-miR-16

16 - 


 - 37

Get sequence
Deep sequencing1254974 reads, 76 experiments
Evidence experimental; cloned [1-2,4-5], Northern [2], Illumina [6,8]
Database links
Predicted targets

Mature sequence mmu-miR-16-1-3p

Accession MIMAT0004625
Previous IDsmmu-miR-16*;mmu-miR-16-1*

58 - 


 - 79

Get sequence
Deep sequencing8792 reads, 73 experiments
Evidence experimental; cloned [5], Illumina [6-7]
Database links
Predicted targets


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PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
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PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).