Stem-loop sequence MI0000547

Accession

MI0000547

ID

mmu-mir-30c-1

Symbol

MGI:Mir30c-1

Description

Mus musculus miR-30c-1 stem-loop

Stem-loop

a     uu    ugu u       u   aca         ---g  a 
 ccaug  guag   g guaaaca ccu   cucucagcu    ug g
 |||||  ||||   | ||||||| |||   |||||||||    ||  
 gguac  cguc   c cauuugu ggg   gagggucgg    ac c
a     --    uuc u       u   --a         ugga  u 

Genome context

• Coordinates (NCBIM37): 4: 120442139-120442227 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000020133 ; Nfyc-006; intron 3

  OTTMUST00000020132 ; Nfyc-005; intron 4

  OTTMUST00000020128 ; Nfyc-001; intron 5

  OTTMUST00000020129 ; Nfyc-002; intron 5

  OTTMUST00000020130 ; Nfyc-003; intron 5

  ENSMUST00000106285 ; Nfyc-203; intron 3

  ENSMUST00000097906 ; Nfyc-202; intron 4

  ENSMUST00000094813 ; Nfyc-201; intron 4

  ENSMUST00000043429 ; Nfyc-001; intron 5

  ENSMUST00000118902 ; Nfyc-002; intron 5

  ENSMUST00000120779 ; Nfyc-003; intron 5

View flanking features

Clustered miRNAs

< 10kb from mmu-mir-30c-1

• mmu-mir-30e: 4: 120445211-120445302 [-]
• mmu-mir-30c-1: 4: 120442139-120442227 [-]

Database links

• EMBL: AJ459726;MMU459726
• ENTREZGENE: 387227;Mirn30c-1
• MGI: 2676909;Mir30c-1

Gene family

MIPF0000005; mir-30

Mature sequence MIMAT0000514

• Accession: MIMAT0000514
• ID: mmu-miR-30c
• Sequence: 17 - uguaaacauccuacacucucagc - 39
• Evidence: experimental; cloned [1-4]
• Predicted targets:
  • MICROCOSM:mmu-miR-30c
  • TARGETSCAN:mmu-miR-30c

Minor miR* sequence MIMAT0004616

• Accession: MIMAT0004616
• ID: mmu-miR-30c-1*
• Sequence: 56 - cugggagaggguuguuuacucc - 77
• Evidence: experimental; cloned [4]
• Predicted targets:
  • MICROCOSM:mmu-miR-30c-1*
  • TARGETSCAN:mmu-miR-30c-1*

References

1. "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. "A pancreatic islet-specific microRNA regulates insulin secretion" Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M Nature. 432:226-230(2004).
3. "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
4. "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).