Stem-loop sequence cbr-mir-80

Accession MI0000518
Description Caenorhabditis briggsae miR-80 stem-loop
Gene family MIPF0000258; mir-80
Stem-loop 
u   -ca   -uu   c  a         --     u  a       -c  u 
 gga   cuc   ucg uc gcuuucgac  augau cu aacaaua  gc g
 |||   |||   ||| || |||||||||  ||||| || |||||||  ||  
 ccu   gag   agc ag cgaaaguug  uacua ga uuguugu  cg u
a   aua   cuu   a  c         au     -  g       aa  c
Get sequence
Deep sequencing
21 reads, 1 experiments
Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1,2]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
Coordinates (WS200) Overlapping transcripts
chrIII: 13406582-13406681 [-]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-80
cbr-mir-238 chrIII: 13410780-13410894 [-]
cbr-mir-80 chrIII: 13406582-13406681 [-]

Mature sequence cbr-miR-80

Accession MIMAT0000487
Sequence

61 -  

ugagaucauuaguugaaagccga

 - 83

Get sequence
Deep sequencing 19 reads, 1 experiments
Evidence by similarity; MI0000051

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:11679672 "An extensive class of small RNAs in Caenorhabditis elegans" Lee RC, Ambros V Science. 294:862-864(2001).