Stem-loop sequence cbr-mir-58

Accession MI0000508
Description Caenorhabditis briggsae miR-58 stem-loop
Gene family MIPF0000282; mir-58
Stem-loop 
a         c    auu  c        a  cca       u 
 uccauugcc uacu   cg aucucauc cu   guauaua a
 ||||||||| ||||   || |||||||| ||   |||||||  
 agguaacgg auga   gc uagaguag ga   uauauau u
a         c    cuu  -        -  --a       a
Get sequence
Deep sequencing
reads, experiments
Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
Coordinates (WS200) Overlapping transcripts
chrIV: 7676290-7676373 [-]
intergenic

Mature sequence cbr-miR-58

Accession MIMAT0000478
Sequence

59 -  

ugagaucguucaguacggcaau

 - 80

Get sequence
Evidence by similarity; MI0000029

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).