Stem-loop sequence hsa-mir-188

AccessionMI0000484 (change log)
Symbol HGNC:MIR188
DescriptionHomo sapiens miR-188 stem-loop
Gene family MIPF0000113; mir-188
   u    -  uc   ca  uc         gu      -ugag u 
5'  gcuc cc  ucu  ca  ccuugcaug  ggaggg     c u
    |||| ||  |||  ||  |||||||||  ||||||     | u
3'  cgag gg  agg  gu  gggacguac  ccuccc     g c
   c    c  -u   ac  uu         ac      caaaa u 
Get sequence
Deep sequencing
8178 reads, 55.4 reads per million, 74 experiments
Confidence Annotation confidence: high
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This miRNA sequence is predicted based on homology to a verified miRNA from mouse [1], later verified in human [2]. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chrX: 50003503-50003588 [+]
OTTHUMT00000056562 ; CCNB3-005; intron 1
OTTHUMT00000056558 ; CCNB3-001; intron 1
OTTHUMT00000056559 ; CCNB3-002; intron 1
OTTHUMT00000056560 ; CCNB3-003; intron 1
OTTHUMT00000056561 ; CCNB3-004; intron 2
ENST00000491907 ; CCNB3-005; intron 1
ENST00000376042 ; CCNB3-001; intron 1
ENST00000376038 ; CCNB3-002; intron 1
ENST00000476167 ; CCNB3-003; intron 1
ENST00000493507 ; CCNB3-004; intron 2
Clustered miRNAs
< 10kb from hsa-mir-188
hsa-mir-532chrX: 50003148-50003238 [+]
hsa-mir-188chrX: 50003503-50003588 [+]
hsa-mir-500achrX: 50008431-50008514 [+]
hsa-mir-362chrX: 50008964-50009028 [+]
hsa-mir-501chrX: 50009722-50009805 [+]
hsa-mir-500bchrX: 50010672-50010750 [+]
hsa-mir-660chrX: 50013241-50013337 [+]
Database links

Mature sequence hsa-miR-188-5p

Accession MIMAT0000457
Previous IDshsa-miR-188

15 - 


 - 35

Get sequence
Deep sequencing7257 reads, 71 experiments
Evidence experimental; cloned [2]
Database links
Predicted targets

Mature sequence hsa-miR-188-3p

Accession MIMAT0004613

54 - 


 - 74

Get sequence
Deep sequencing917 reads, 53 experiments
Evidence experimental; cloned [2-3]
Database links
Predicted targets


PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:18230126 "New miRNAs cloned from neuroblastoma" Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F BMC Genomics. 9:52(2008).