Stem-loop sequence hsa-mir-9-3

AccessionMI0000468 (change log)
Symbol HGNC:MIR9-3
DescriptionHomo sapiens miR-9-3 stem-loop
Gene family MIPF0000014; mir-9
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-9/mir-79_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

The miR-9 microRNA (homologous to miR-79), is a short non-coding RNA gene involved in gene regulation. The mature ~21nt miRNAs are processed from hairpin precursor sequences by the Dicer enzyme. The dominant mature miRNA sequence is processed from the 5' arm of the mir-9 precursor, and from the 3' arm of the mir-79 precursor. The mature products are thought to have regulatory roles through complementarity to mRNA. In vertebrates, miR-9 is highly expressed in the brain, and is suggested to regulate neuronal differentiation. A number of specific targets of miR-9 have been proposed, including the transcription factor REST and its partner CoREST.

Show Wikipedia entry View @ Wikipedia Edit Wikipedia entry
   g    cc       -  c               g     gu  ca 
5'  gagg  cguuucu cu uuugguuaucuagcu uauga  gc  c
    ||||  ||||||| || ||||||||||||||| |||||  ||   
3'  cucu  guaaaga ga aagccaauagaucga auacu  cg  a
   a    ua       u  -               a     gc  ag 
Get sequence
Deep sequencing
143882 reads, 1.48e+03 reads per million, 71 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr15: 89368017-89368106 [+]
OTTHUMT00000416265 ; ACAN-001; intron 1
OTTHUMT00000418839 ; ACAN-008; intron 1
OTTHUMT00000416269 ; ACAN-004; intron 1
ENST00000558207 ; ACAN-001; intron 1
ENST00000559004 ; ACAN-008; intron 1
ENST00000352105 ; ACAN-004; intron 1
ENST00000439576 ; ACAN-201; intron 1
Database links

Mature sequence hsa-miR-9-5p

Accession MIMAT0000441
Previous IDshsa-miR-9

16 - 


 - 38

Get sequence
Deep sequencing201682 reads, 69 experiments
Evidence experimental; cloned [2]
Database links
Predicted targets

Mature sequence hsa-miR-9-3p

Accession MIMAT0000442
Previous IDshsa-miR-9*

55 - 


 - 76

Get sequence
Deep sequencing230002 reads, 62 experiments
Evidence experimental; cloned [2]
Database links
Predicted targets


PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).