Stem-loop sequence dme-mir-317

Accession MI0000429
Description Drosophila melanogaster miR-317 stem-loop
Gene family MIPF0000144; mir-317
Stem-loop 
    --a  u         aua    --     c      u aa  a 
augc   ac gccauuggg   cacc  cugug ucgcuu g  ug a
||||   || |||||||||   ||||  ||||| |||||| |  || a
uacg   ug cggugaccu   gugg  gacac agugaa c  ac u
    guu  c         aug    uc     a      - ga  g
Get sequence
Deep sequencing
429016 reads, 50 experiments
Comments

miR-317 was identified and 5' end mapped by cloning. Reference [1] reports a length distribution of 20-24 nt, with 24 nt most commonly expressed. The sequence is localised to chromosome 3R.

Genome context
Coordinates (BDGP5.0) Overlapping transcripts
3R: 5916848-5916939 [+]
intergenic
Clustered miRNAs
< 10kb from dme-mir-317
dme-mir-317 3R: 5916848-5916939 [+]
dme-mir-277 3R: 5925744-5925843 [+]
dme-mir-34 3R: 5926658-5926756 [+]

Mature sequence dme-miR-317-5p

Accession MIMAT0020843
Sequence

14 -  

ugggauacacccugugcucgcu

 - 35

Get sequence
Deep sequencing 26998 reads, 49 experiments
Evidence not experimental
Predicted targets

Mature sequence dme-miR-317-3p

Accession MIMAT0000409
Previous IDs dme-miR-317
Sequence

56 -  

ugaacacagcuggugguauccagu

 - 79

Get sequence
Deep sequencing 399179 reads, 50 experiments
Evidence experimental; cloned [1], 454 [2-3], Solexa [3]
Predicted targets

References

1
PMID:12919683 "The small RNA profile during Drosophila melanogaster development" Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T Dev Cell. 5:337-350(2003).
2
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
3
PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).