Stem-loop sequence dme-mir-303

Accession MI0000409
Description Drosophila melanogaster miR-303 stem-loop
Gene family MIPF0001013; mir-303
Stem-loop 
        ua     c c             aau 
ucuugguu  gguuu a aggaaacugguuu   a
||||||||  ||||| | |||||||||||||    
agaacuaa  cuaaa u uccuuugaucaaa   a
        uc     a c             agc
Get sequence
Deep sequencing
1656 reads, 45 experiments
Comments

miR-303 was identified and ends mapped by cloning. The sequence is localised to chromosome X.

Genome context
Coordinates (BDGP5.0) Overlapping transcripts
X: 4260212-4260281 [-]
intergenic
Clustered miRNAs
< 10kb from dme-mir-303
dme-mir-984 X: 4262679-4262768 [-]
dme-mir-983-2 X: 4262516-4262614 [-]
dme-mir-983-1 X: 4262342-4262432 [-]
dme-mir-303 X: 4260212-4260281 [-]
dme-mir-982 X: 4259839-4259931 [-]

Mature sequence dme-miR-303-5p

Accession MIMAT0000388
Previous IDs dme-miR-303
Sequence

7 -  

uuuagguuucacaggaaacuggu

 - 29

Get sequence
Deep sequencing 1387 reads, 43 experiments
Evidence experimental; cloned [1], 454 [2-3], Solexa [3]
Predicted targets

Mature sequence dme-miR-303-3p

Accession MIMAT0020824
Sequence

43 -  

cuaguuuccucuaaaauccuaa

 - 64

Get sequence
Deep sequencing 269 reads, 25 experiments
Evidence not experimental
Predicted targets

References

1
PMID:12919683 "The small RNA profile during Drosophila melanogaster development" Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T Dev Cell. 5:337-350(2003).
2
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
3
PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).