Stem-loop sequence mmu-mir-294

Accession

MI0000392

Symbol

MGI:Mir294

Description

Mus musculus miR-294 stem-loop

Gene family

MIPF0000068; mir-290

Stem-loop

u       a  c    u     u      c  a   aa   u 
 uccauau gc auac caaaa ggaggc cu ucu  gcu u
 ||||||| || |||| ||||| |||||| || |||  |||  
 aggugua cg ugug guuuu ccuucg ga agg  uga u
g       c  u    u     c      u  a   --   a 

Deep sequencing

47859 reads, 43 experiments

Genome context

• Coordinates (GRCm38): chr7: 3220641-3220724 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-294

• mmu-mir-290: chr7: 3218626-3218708 [+]
• mmu-mir-291a: chr7: 3218919-3219000 [+]
• mmu-mir-292: chr7: 3219189-3219270 [+]
• mmu-mir-291b: chr7: 3219482-3219560 [+]
• mmu-mir-293: chr7: 3220343-3220422 [+]
• mmu-mir-294: chr7: 3220641-3220724 [+]
• mmu-mir-295: chr7: 3220773-3220841 [+]

Database links

• ENTREZGENE: 100049712;Mir294
• MGI: 3711327;Mir294

Mature sequence mmu-miR-294-5p

• Accession: MIMAT0004574
• Previous IDs: mmu-miR-294*
• Sequence: 15 - acucaaaauggaggcccuaucu - 36
• Deep sequencing: 2740 reads, 8 experiments
• Evidence: experimental; cloned [2], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-294-5p
  • MICRORNA.ORG:mmu-miR-294-5p
  • MIRDB:mmu-miR-294-5p
  • RNA22-MMU:mmu-miR-294-5p

Mature sequence mmu-miR-294-3p

• Accession: MIMAT0000372
• Previous IDs: mmu-miR-294
• Sequence: 51 - aaagugcuucccuuuugugugu - 72
• Deep sequencing: 43688 reads, 29 experiments
• Evidence: experimental; cloned [1-2], Northern [1], Solexa [3-4]
• Validated targets:
  • TARBASE:mmu-miR-294-3p
• Predicted targets:
  • DIANA-MICROT:mmu-miR-294-3p
  • MICRORNA.ORG:mmu-miR-294-3p
  • MIRDB:mmu-miR-294-3p
  • RNA22-MMU:mmu-miR-294-3p
  • TARGETSCAN-VERT:mmu-miR-294

References

1. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).