Stem-loop sequence mmu-mir-293

Accession

MI0000391

Symbol

MGI:Mir293

Description

Mus musculus miR-293 stem-loop

Gene family

MIPF0000068; mir-290

Stem-loop

u      u  gg    -      g    a      guuc 
 ucaauc gu  uacu caaacu ugug cauuuu    u
 |||||| ||  |||| |||||| |||| ||||||    u
 aguuag cg  guga guuuga acgc gugaag    u
g      c  uu    u      g    c      aaug 

Deep sequencing

135149 reads, 52 experiments

Genome context

• Coordinates (GRCm38): chr7: 3220343-3220422 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-293

• mmu-mir-290: chr7: 3218626-3218708 [+]
• mmu-mir-291a: chr7: 3218919-3219000 [+]
• mmu-mir-292: chr7: 3219189-3219270 [+]
• mmu-mir-291b: chr7: 3219482-3219560 [+]
• mmu-mir-293: chr7: 3220343-3220422 [+]
• mmu-mir-294: chr7: 3220641-3220724 [+]
• mmu-mir-295: chr7: 3220773-3220841 [+]

Database links

• ENTREZGENE: 100049714;Mir293
• MGI: 3711326;Mir293

Mature sequence mmu-miR-293-5p

• Accession: MIMAT0004573
• Previous IDs: mmu-miR-293*
• Sequence: 14 - acucaaacugugugacauuuug - 35
• Deep sequencing: 12318 reads, 13 experiments
• Evidence: experimental; cloned [2], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-293-5p
  • MICRORNA.ORG:mmu-miR-293-5p
  • MIRDB:mmu-miR-293-5p
  • RNA22-MMU:mmu-miR-293-5p

Mature sequence mmu-miR-293-3p

• Accession: MIMAT0000371
• Previous IDs: mmu-miR-293
• Sequence: 48 - agugccgcagaguuuguagugu - 69
• Deep sequencing: 121746 reads, 41 experiments
• Evidence: experimental; cloned [1-2], Northern [1], Solexa [3-4]
• Validated targets:
  • TARBASE:mmu-miR-293-3p
• Predicted targets:
  • DIANA-MICROT:mmu-miR-293-3p
  • MICRORNA.ORG:mmu-miR-293-3p
  • MIRDB:mmu-miR-293-3p
  • RNA22-MMU:mmu-miR-293-3p
  • TARGETSCAN-VERT:mmu-miR-293

References

1. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).