Stem-loop sequence dme-mir-280

Accession MI0000365
Description Drosophila melanogaster miR-280 stem-loop
Gene family MIPF0000240; mir-280
Stem-loop 
---------u      --ua     u   g                --a      
          ggcuuu    uguau uac uugcauaugaaaugau   uuuau 
          ||||||    ||||| ||| ||||||||||||||||   |||| a
          cuggag    acgua aug gacguauauuuuauua   aaaug 
gucacaccuc      cuga     u   -                gac
Get sequence
Deep sequencing
3 reads, 3 experiments
Comments

This sequence is computationally predicted based on conservation in D. pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting confirmed that the strand containing the predicted miR is predominantly expressed. The sequence is localised to chromosome 2R.

Genome context
Coordinates (BDGP5.0) Overlapping transcripts
2R: 4185611-4185705 [+]
intergenic

Mature sequence dme-miR-280-5p

Accession MIMAT0000343
Previous IDs dme-miR-280
Sequence

10 -  

uguauuuacguugcauaugaaaugaua

 - 36

Get sequence
Deep sequencing 3 reads, 3 experiments
Evidence experimental; Northern [1]
Predicted targets

References

1
PMID:12844358 "Computational identification of Drosophila microRNA genes" Lai EC, Tomancak P, Williams RW, Rubin GM Genome Biol. 4:R42(2003).