Stem-loop sequence cel-mir-234

Accession MI0000309
Description Caenorhabditis elegans miR-234 stem-loop
Gene family MIPF0000106; mir-137
Stem-loop 
--caaaaaauga     c       ca    u       aaaa    uc 
            ucaaa gguauuc  gagu gauaaua    ugcg  a
            ||||| |||||||  |||| |||||||    ||||   
            aguuu ccauaag  cucg uuauuau    acgc  g
auguguaucauc     c       ag    -       -cua    cu
Get sequence
Deep sequencing
reads, experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
II: 14466188-14466283 [-]
antisense
C13B4.6 ; C13B4.6; exon 1
Database links

Mature sequence cel-miR-234-5p

Accession MIMAT0020330
Previous IDs cel-miR-234*
Sequence

16 -  

cgguauuccagaguugauaaua

 - 37

Get sequence
Evidence experimental; Solexa [6]
Predicted targets

Mature sequence cel-miR-234-3p

Accession MIMAT0000289
Previous IDs cel-miR-234
Sequence

61 -  

uuauugcucgagaauacccuu

 - 81

Get sequence
Evidence experimental; cloned [1,3], Northern [1], Solexa [4,6], CLIPseq [5]
Validated targets
Predicted targets

References

1
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
2
PMID:12747828 "MicroRNAs and other tiny endogenous RNAs in C. elegans" Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D Curr Biol. 13:807-818(2003).
3
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
4
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
5
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
6
PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).