Stem-loop sequence mmu-mir-193a

Accession

MI0000235

Previous IDs

mmu-mir-193

Symbol

MGI:Mir193

Description

Mus musculus miR-193 stem-loop

Gene family

MIPF0000082; mir-193

Stem-loop

   ag     u     cg   a  a    agu 
gag  cuggg cuuug  ggc ag ugag   g
|||  ||||| |||||  ||| || ||||    
cuc  gaccc gaaac  ccg uc acuu   u
   cu     u     au   g  a    gac 

Deep sequencing

36372 reads, 92 experiments

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context

• Coordinates (GRCm38): chr11: 79711969-79712034 [+]
• Overlapping transcripts:

  intergenic

Database links

• EMBL: AJ560735;MMU560735
• ENTREZGENE: 387188;Mir193
• MGI: 2676857;Mir193

Mature sequence mmu-miR-193a-5p

• Accession: MIMAT0004544
• Previous IDs: mmu-miR-193*;mmu-miR-193-5p
• Sequence: 7 - ugggucuuugcgggcaagauga - 28
• Deep sequencing: 4090 reads, 67 experiments
• Evidence: experimental; cloned [3], Solexa [4-5]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-193a-5p
  • MICRORNA.ORG:mmu-miR-193a-5p
  • MIRDB:mmu-miR-193a-5p
  • RNA22-MMU:mmu-miR-193a-5p

Mature sequence mmu-miR-193a-3p

• Accession: MIMAT0000223
• Previous IDs: mmu-miR-193;mmu-miR-193-3p
• Sequence: 41 - aacuggccuacaaagucccagu - 62
• Deep sequencing: 26712 reads, 77 experiments
• Evidence: experimental; cloned [1-3], Northern [2], Solexa [4-5]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-193a-3p
  • MICRORNA.ORG:mmu-miR-193a-3p
  • MIRDB:mmu-miR-193a-3p
  • RNA22-MMU:mmu-miR-193a-3p
  • TARGETSCAN-VERT:mmu-miR-193

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).