Stem-loop sequence mmu-mir-24-1

Accession

MI0000231 (change log)

Previous IDs

mmu-mir-189

Symbol

MGI:Mir24-1

Description

Mus musculus miR-24-1 stem-loop

Gene family

MIPF0000041; mir-24

Literature search

141 open access papers mention mmu-mir-24-1
(1276 sentences)

Stem-loop

       g  g   a         ua     ucuca 
5' cucc gu ccu cugagcuga  ucagu     u
   |||| || ||| |||||||||  |||||     u
3' gagg ca gga gacuugacu  gguca     u
       a  a   c         -c     cacac 

Deep sequencing

2352080 reads, 1.11e+04 reads per million, 107 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr13: 63301208-63301275 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000076332 ; AC130827.2-002; intron 3

  ENSMUST00000159152 ; 2010111I01Rik-002; intron 3

  ENSMUST00000021911 ; 2010111I01Rik-201; intron 15

  antisense

  ENSMUST00000175000 ; Mir3074-1-201; exon 1

Clustered miRNAs

< 10kb from mmu-mir-24-1

• mmu-mir-23b: chr13: 63300484-63300557 [+]
• mmu-mir-27b: chr13: 63300712-63300784 [+]
• mmu-mir-3074-1: chr13: 63301199-63301283 [-]
• mmu-mir-24-1: chr13: 63301208-63301275 [+]

Database links

• EntrezGene:Mirn24-1
• MGI:Mir24-1
• RNAcentral:URS000063243F_10090
• miRBase Tracker:MI0000231

Mature sequence mmu-miR-24-1-5p

• Accession: MIMAT0000218
• Previous IDs: mmu-miR-189;mmu-miR-24*;mmu-miR-24-1*
• Sequence: 6 - gugccuacugagcugauaucagu - 28
• Deep sequencing: 24109 reads, 103 experiments
• Evidence: experimental; cloned [2,7], Illumina [8-9]
• Database links:
  • RNAcentral:URS0000232BE1_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-24-1-5p
  • miRDB:mmu-miR-24-1-5p
  • microrna.org:mmu-miR-24-1-5p

Mature sequence mmu-miR-24-3p

• Accession: MIMAT0000219
• Previous IDs: mmu-miR-24
• Sequence: 44 - uggcucaguucagcaggaacag - 65
• Deep sequencing: 4657101 reads, 107 experiments
• Evidence: experimental; cloned [1-2,4-6], Northern [2], Illumina [7]
• Database links:
  • RNAcentral:URS000059273E_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-24-3p
  • miRDB:mmu-miR-24-3p
  • microrna.org:mmu-miR-24-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
3. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
4. PMID:12554860 "Numerous microRNPs in neuronal cells containing novel microRNAs" Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G RNA. 9:180-186(2003).
5. PMID:15538371 "A pancreatic islet-specific microRNA regulates insulin secretion" Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M Nature. 432:226-230(2004).
6. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
7. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
8. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
9. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).