Stem-loop sequence ath-MIR167b

AccessionMI0000209 (change log)
DescriptionArabidopsis thaliana miR167b stem-loop
Gene family MIPF0000023; MIR167_1
Literature search

43 open access papers mention ath-MIR167b
(200 sentences)

Stem-loop
        ca     a    - -c           u   u    aa   aug      g 
5' gggaa  aguga gcug c  agcaugaucua cuu gguu  gag   aaugug a
   |||||  ||||| |||| |  ||||||||||| ||| ||||  |||   ||||||  
3' uccuu  ucacu cgac g  ucguacuggau gaa ccaa  uuc   uuauac a
        cc     c    a uc           c   c    -a   --g      a 
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Confidence Annotation confidence: not enough data
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Comments

MIR167b is thought, like miR160, to target mRNAs coding for auxin response factors, DNA binding proteins that are thought to control transcription in response to the phytohormone auxin. Transcriptional regulation is important for many of the diverse developmental responses to auxin signals, which include cell elongation, division, and differentiation in both roots and shoots [2].

Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr3: 23406168-23406276 [+]
intergenic
Database links

Mature sequence ath-miR167b

Accession MIMAT0000197
Sequence

10 - 

ugaagcugccagcaugaucua

 - 30

Get sequence
Evidence experimental; cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6]

References

1
PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2
PMID:12202040 "Prediction of plant microRNA targets" Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP Cell. 110:513-520(2002).
3
PMID:16040653 "Expression of Arabidopsis MIRNA genes" Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol. 138:2145-2154(2005).
4
PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC Genome Res. 16:1276-1288(2006).
5
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
6
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).