Stem-loop sequence ath-MIR160a

AccessionMI0000190 (change log)
DescriptionArabidopsis thaliana miR160a stem-loop
Gene family MIPF0000032; MIR160
Literature search

38 open access papers mention ath-MIR160a
(127 sentences)

Stem-loop
         c       cu         a   u   cc     a 
5' guaugc uggcucc  guaugccau ugc gag  caucg g
   |||||| |||||||  ||||||||| ||| |||  ||||| u
3' uauacg accgagg  uaugcggua gug cuc  guagc a
         u       ag         g   c   ca     u 
Get sequence
Confidence Annotation confidence: not enough data
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Comments

MIR160a is thought to target mRNAs coding for auxin response factor proteins [2].

Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr2: 16340279-16340363 [+]
intergenic
Database links

Mature sequence ath-miR160a-5p

Accession MIMAT0000178
Previous IDsath-miR160a
Sequence

4 - 

ugccuggcucccuguaugcca

 - 24

Get sequence
Evidence experimental; cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6]

Mature sequence ath-miR160a-3p

Accession MIMAT0031874
Sequence

64 - 

gcguaugaggagccaugcaua

 - 84

Get sequence
Evidence experimental; Illumina [7]

References

1
PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2
PMID:12202040 "Prediction of plant microRNA targets" Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP Cell. 110:513-520(2002).
3
PMID:16040653 "Expression of Arabidopsis MIRNA genes" Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol. 138:2145-2154(2005).
4
PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC Genome Res. 16:1276-1288(2006).
5
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
6
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).
7
PMID:24119003 "Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots" Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA BMC Genomics. 14:701(2013).