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miRBase |
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Stem-loop sequence ath-MIR157d |
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Accession | MI0000187 (change log) | ||||
Description | Arabidopsis thaliana miR157d stem-loop | ||||
Gene family | MIPF0000008; MIR156 | ||||
Literature search |
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17 open access papers mention ath-MIR157d | ||||
Stem-loop |
u u ------u u c - ua ugcuaugcaaaacagacacagauauguguuucuaauuguauuucauacuuuaaccuc 5' guggaggg gauag g ggu g ugacagaag auagagagcac agga a |||||||| ||||| | ||| | ||||||||| ||||||||||| |||| a 3' caucucuc uuauc c cca c acugucuuc uaucucucgug uccu a u u uuucuuu - u g ua uaucucuacgucuaucagaagaucgagaagauagaaagaaagaaaaaaauauaguug |
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Confidence |
Annotation confidence: not enough data
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Comments |
MIR157d is thought, like the MIR156 family, to target mRNAs coding for proteins containing the Squamosa-promoter Binding Protein (SBP) box [2]. |
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Genome context |
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Database links |
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Mature sequence ath-miR157d |
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Accession | MIMAT0000175 |
Sequence |
24 - ugacagaagauagagagcac - 43 |
Evidence | experimental; cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
References |
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1 |
PMID:12101121
"MicroRNAs in plants"
Genes Dev. 16:1616-1626(2002).
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2 |
PMID:12202040
"Prediction of plant microRNA targets"
Cell. 110:513-520(2002).
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3 |
PMID:16040653
"Expression of Arabidopsis MIRNA genes"
Plant Physiol. 138:2145-2154(2005).
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4 |
PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
Genome Res. 16:1276-1288(2006).
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5 |
PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
Genes Dev. 20:3407-3425(2006).
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6 |
PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
J Exp Bot. 61:165-177(2010).
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