Stem-loop sequence mmu-mir-135a-1

AccessionMI0000161 (change log)
Previous IDsmmu-mir-135;mmu-mir-135-1
Symbol MGI:Mir135a-1
DescriptionMus musculus miR-135a-1 stem-loop
Gene family MIPF0000028; mir-135
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-135_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

The miR-135 microRNA precursor is a small non-coding RNA that is involved in regulating gene expression. It has been shown to be expressed in human, mouse and rat. miR-135 has now been predicted or experimentally confirmed in a wide range of vertebrate species (MIPF0000028). Precursor microRNAs are ~70 nucleotides in length and are processed by the Dicer enzyme to produce the shorter 21-24 nucleotide mature sequence. In this case the mature sequence is excised from the 5' arm of the hairpin.

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   agg         u u          uu            uucua 
5'    ccucacugu c cuauggcuuu  auuccuauguga     u
      ||||||||| | ||||||||||  ||||||||||||     u
3'    ggaguggca g ggugccgagg  uagggauauacu     g
   aua         u c          -u            cgcuc 
Get sequence
Deep sequencing
170934 reads, 2.25e+03 reads per million, 60 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr9: 106154124-106154213 [+]
OTTMUST00000088120 ; RP23-441D9.4-001; intron 4
ENSMUST00000143956 ; D030055H07Rik-001; intron 4
OTTMUST00000088124 ; Glyctk-002; 3'UTR (exon 4)
OTTMUST00000088123 ; Glyctk-001; 3'UTR (exon 5)
ENSMUST00000036382 ; Glyctk-002; 3'UTR (exon 4)
ENSMUST00000112543 ; Glyctk-001; 3'UTR (exon 5)
Database links

Mature sequence mmu-miR-135a-5p

Accession MIMAT0000147
Previous IDsmmu-miR-135a

17 - 


 - 39

Get sequence
Deep sequencing331882 reads, 51 experiments
Evidence experimental; cloned [1,3], Illumina [4-5]
Database links
Predicted targets

Mature sequence mmu-miR-135a-1-3p

Accession MIMAT0004531
Previous IDsmmu-miR-135a*;mmu-miR-135a-1*

56 - 


 - 77

Get sequence
Deep sequencing2900 reads, 35 experiments
Evidence experimental; cloned [3], Illumina [4-5]
Database links
Predicted targets


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PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).