Stem-loop sequence dme-mir-10

Accession MI0000130
Description Drosophila melanogaster miR-10 stem-loop
Gene family MIPF0000033; mir-10
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-10_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

The miR-10 microRNA precursor is a short non-coding RNA gene involved in gene regulation. It is part of an RNA gene family which contains miR-10, miR-51, miR-57, miR-99 and miR-100. miR-10, miR-99 and miR-100 have now been predicted or experimentally confirmed in a wide range of species. (MIPF0000033, MIPF0000025) mir-51 and mir-57 have currently only been identified in the nematode Caenorhabditis elegans (MIPF0000268, MIPF0000271). microRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In this case the mature sequence comes from the 5' arm of the precursor. The mature products are thought to have regulatory roles through complementarity to mRNA.

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Stem-loop
     ucu   -  g    u             auacu 
ccacg   acc cu uaga ccgaauuuguuuu     a
|||||   ||| || |||| |||||||||||||      
ggugu   ugg ga aucu ggcuuaaacagga     g
     guu   a  g    u             auuuc 
Get sequence
Deep sequencing
50005 reads, 49 experiments
Comments

The first cloning experiments identified the mature miR-10 from the 5' arm of the D. melanogaster precursor [1,3]. High-throughput sequencing later showed that the sequence from the 3' arm dominates [4-5].

Genome context
Coordinates (BDGP5.0) Overlapping transcripts
3R: 2635228-2635304 [-]
intergenic
Database links

Mature sequence dme-miR-10-5p

Accession MIMAT0000115
Previous IDs dme-miR-10;dme-miR-10*
Sequence

9 - 

acccuguagauccgaauuuguu

 - 30

Get sequence
Deep sequencing 9866 reads, 48 experiments
Evidence experimental; cloned [1,3], Northern [1-3], 454 [4-5], Solexa [5]
Predicted targets

Mature sequence dme-miR-10-3p

Accession MIMAT0012531
Previous IDs dme-miR-10
Sequence

49 - 

caaauucgguucuagagagguuu

 - 71

Get sequence
Deep sequencing 40129 reads, 48 experiments
Evidence experimental; cloned [1,3], Northern [1-3], 454 [4-5], Solexa [5]
Predicted targets

References

1
PMID:11679670 "Identification of novel genes coding for small expressed RNAs" Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T Science. 294:853-858(2001).
2
3
PMID:12919683 "The small RNA profile during Drosophila melanogaster development" Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T Dev Cell. 5:337-350(2003).
4
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
5
PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).