Stem-loop sequence dme-mir-4

Accession MI0000122
Description Drosophila melanogaster miR-4 stem-loop
Gene family MIPF0000305; mir-4
Stem-loop 
 ug    u gu   uu    c   c   cuuag      u 
u  caau a  uuc  uggu guc agc     gugauu u
|  |||| |  |||  |||| ||| |||     |||||| u
g  guug u  aag  acca cag ucg     uacugg c
 gu    c ug   uu    a   a   --aaa      c
Get sequence
Deep sequencing
78440 reads, 40 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
2R: 15548794-15548874 [-]
intergenic
Clustered miRNAs
< 10kb from dme-mir-4
dme-mir-309 2R: 15549211-15549279 [-]
dme-mir-3 2R: 15549100-15549168 [-]
dme-mir-286 2R: 15548927-15549026 [-]
dme-mir-4 2R: 15548794-15548874 [-]
dme-mir-5 2R: 15548663-15548731 [-]
dme-mir-6-1 2R: 15548508-15548589 [-]
dme-mir-6-2 2R: 15548374-15548447 [-]
dme-mir-6-3 2R: 15548221-15548300 [-]
Database links

Mature sequence dme-miR-4-5p

Accession MIMAT0020785
Sequence

14 -  

cuuuggucguccagccuuagguga

 - 37

Get sequence
Deep sequencing 15344 reads, 25 experiments
Evidence not experimental
Predicted targets

Mature sequence dme-miR-4-3p

Accession MIMAT0000109
Previous IDs dme-miR-4
Sequence

49 -  

auaaagcuagacaaccauuga

 - 69

Get sequence
Deep sequencing 63095 reads, 40 experiments
Evidence experimental; cloned [1,3], Northern [1-3], 454 [4-5], Solexa [5]
Predicted targets

References

1
PMID:11679670 "Identification of novel genes coding for small expressed RNAs" Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T Science. 294:853-858(2001).
2
PMID:12812784 "Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity" Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V Dev Biol. 259:9-18(2003).
3
PMID:12919683 "The small RNA profile during Drosophila melanogaster development" Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T Dev Cell. 5:337-350(2003).
4
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
5
PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).