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miRBase |
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Stem-loop sequence dme-mir-4 |
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Accession | MI0000122 (change log) | |||||||||||||||||
Description | Drosophila melanogaster miR-4 stem-loop | |||||||||||||||||
Gene family | MIPF0000305; mir-4 | |||||||||||||||||
Literature search |
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6 open access papers mention dme-mir-4 | |||||||||||||||||
Stem-loop |
ug u gu uu c c cuuag u 5' u caau a uuc uggu guc agc gugauu u | |||| | ||| |||| ||| ||| |||||| u 3' g guug u aag acca cag ucg uacugg c gu c ug uu a a --aaa c |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence dme-miR-4-5p |
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Accession | MIMAT0020785 |
Sequence |
14 - cuuuggucguccagccuuagguga - 37 |
Deep sequencing | 5536 reads, 30 experiments |
Evidence | not experimental |
Database links |
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Mature sequence dme-miR-4-3p |
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Accession | MIMAT0000109 |
Previous IDs | dme-miR-4 |
Sequence |
49 - auaaagcuagacaaccauuga - 69 |
Deep sequencing | 27144 reads, 41 experiments |
Evidence | experimental; cloned [1,3], Northern [1-3], 454 [4-5], Illumina [5] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:11679670
"Identification of novel genes coding for small expressed RNAs"
Science. 294:853-858(2001).
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2 | |
3 |
PMID:12919683
"The small RNA profile during Drosophila melanogaster development"
Dev Cell. 5:337-350(2003).
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4 |
PMID:17989254
"Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"
Genome Res. 17:1850-1864(2007).
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5 |
PMID:17989255
"Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes"
Genome Res. 17:1865-1879(2007).
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