Stem-loop sequence hsa-mir-26b

AccessionMI0000084 (change log)
Symbol HGNC:MIR26B
DescriptionHomo sapiens miR-26b stem-loop
Gene family MIPF0000043; mir-26
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-26_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

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Stem-loop
       ga   -   u        uc           u ug 
5' ccgg  ccc agu caaguaau  aggauagguug g  c
   ||||  ||| ||| ||||||||  ||||||||||| |   
3' ggcc  ggg ucg guucauua  ucuuguccgac c  u
       ag   c   -        cc           - ug 
Get sequence
Deep sequencing
1688176 reads, 1.95e+04 reads per million, 77 experiments
Confidence Annotation confidence: high
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Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [4].

Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr2: 218402646-218402722 [+]
antisense
OTTHUMT00000339331 ; DIRC3-003; intron 1
OTTHUMT00000339330 ; DIRC3-002; intron 2
ENST00000474063 ; DIRC3-003; intron 1
ENST00000486365 ; DIRC3-002; intron 2
Database links

Mature sequence hsa-miR-26b-5p

Accession MIMAT0000083
Previous IDshsa-miR-26b
Sequence

12 - 

uucaaguaauucaggauaggu

 - 32

Get sequence
Deep sequencing1687192 reads, 77 experiments
Evidence experimental; cloned [1,3-5], Northern [1]
Database links
Predicted targets

Mature sequence hsa-miR-26b-3p

Accession MIMAT0004500
Previous IDshsa-miR-26b*
Sequence

47 - 

ccuguucuccauuacuuggcu

 - 67

Get sequence
Deep sequencing986 reads, 61 experiments
Evidence experimental; cloned [4]
Database links
Predicted targets

References

1
PMID:11679670 "Identification of novel genes coding for small expressed RNAs" Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T Science. 294:853-858(2001).
2
PMID:14573789 "Reduced accumulation of specific microRNAs in colorectal neoplasia" Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ Mol Cancer Res. 1:882-891(2003).
3
PMID:15325244 "Altered expression profiles of microRNAs during TPA-induced differentiation of HL-60 cells" Kasashima K, Nakamura Y, Kozu T Biochem Biophys Res Commun. 322:403-410(2004).
4
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
5
PMID:17616659 "Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).