Stem-loop sequence cel-mir-81

Accession MI0000052
Description Caenorhabditis elegans miR-81 stem-loop
Gene family MIPF0000153; bantam
Stem-loop 
aucagu   au    -c       uc         c       g   ---   auc 
      gcc  cgug  ccaacag  gguuuucac gugaucu aga   gca   c
      |||  ||||  |||||||  ||||||||| ||||||| |||   |||   a
      cgg  gcau  gguuguu  ucgaaagug uacuaga ucu   cgu   a
-guuuu   --    cu       ga         c       g   uuu   aaa
Get sequence
Deep sequencing
52758 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
X: 2431065-2431172 [+]
antisense
T07D1.2.2 ; T07D1.2.2; intron 5
T07D1.2.2 ; T07D1.2.2; intron 5
T07D1.2.2 ; T07D1.2.2; intron 5
T07D1.2.1 ; T07D1.2.1; intron 6
T07D1.2.3 ; T07D1.2.3; intron 6
T07D1.2.1 ; T07D1.2.1; intron 6
T07D1.2.3 ; T07D1.2.3; intron 6
T07D1.2.1 ; T07D1.2.1; intron 6
T07D1.2.3 ; T07D1.2.3; intron 6
Clustered miRNAs
< 10kb from cel-mir-81
cel-mir-81 X: 2431065-2431172 [+]
cel-mir-82 X: 2435251-2435347 [-]
Database links

Mature sequence cel-miR-81-5p

Accession MIMAT0015109
Previous IDs cel-miR-81*
Sequence

25 -  

cgguuuucaccgugaucugaga

 - 46

Get sequence
Deep sequencing 2 reads, 2 experiments
Evidence experimental; CLIPseq [7]
Predicted targets

Mature sequence cel-miR-81-3p

Accession MIMAT0000054
Previous IDs cel-miR-81
Sequence

67 -  

ugagaucaucgugaaagcuagu

 - 88

Get sequence
Deep sequencing 52754 reads, 6 experiments
Evidence experimental; cloned [1-5], Solexa [6], CLIPseq [7]
Validated targets
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:11679672 "An extensive class of small RNAs in Caenorhabditis elegans" Lee RC, Ambros V Science. 294:862-864(2001).
3
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
4
PMID:12747828 "MicroRNAs and other tiny endogenous RNAs in C. elegans" Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D Curr Biol. 13:807-818(2003).
5
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
6
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
7
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).