Stem-loop sequence cel-mir-71

Accession MI0000042
Description Caenorhabditis elegans miR-71 stem-loop
Gene family MIPF0000278; mir-71
Stem-loop 
------   -  c   ga   a         u         g   u   a 
      guc ug ucu  acg ugaaagaca ggguaguga acg cgg g
      ||| || |||  ||| ||||||||| ||||||||| ||| |||  
      cag gc agg  ugc gcuuuuugu cuuaucacu ugc gcu c
aagguc   u  u   gc   c         -         a   u   c
Get sequence
Deep sequencing
36383 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
I: 9379919-9380012 [-]
sense
F16A11.3a ; F16A11.3a; intron 5
F16A11.3c.2 ; F16A11.3c.2; intron 5
F16A11.3b ; F16A11.3b; intron 5
F16A11.3c.1 ; F16A11.3c.1; intron 5
F16A11.3a.2 ; F16A11.3a.2; intron 5
F16A11.3a.1 ; F16A11.3a.1; intron 5
F16A11.3b.1 ; F16A11.3b.1; intron 5
F16A11.3c.2 ; F16A11.3c.2; intron 5
F16A11.3b.2 ; F16A11.3b.2; intron 5
F16A11.3c.1 ; F16A11.3c.1; intron 5
F16A11.3a.2 ; F16A11.3a.2; intron 5
F16A11.3a.1 ; F16A11.3a.1; intron 5
F16A11.3b.1 ; F16A11.3b.1; intron 5
F16A11.3c.2 ; F16A11.3c.2; intron 5
F16A11.3b.2 ; F16A11.3b.2; intron 5
F16A11.3c.1 ; F16A11.3c.1; intron 5
F16A11.3d ; F16A11.3d; intron 8
F16A11.3d ; F16A11.3d; intron 8
F16A11.3d ; F16A11.3d; intron 8
antisense
F16A11.6 ; F16A11.6; exon 1
F16A11.6 ; F16A11.6; exon 1
F16A11.6 ; F16A11.6; exon 1
Clustered miRNAs
< 10kb from cel-mir-71
cel-mir-71 I: 9379919-9380012 [-]
cel-mir-2 I: 9372760-9372857 [-]
Database links

Mature sequence cel-miR-71-5p

Accession MIMAT0000043
Previous IDs cel-miR-71
Sequence

16 -  

ugaaagacauggguagugagacg

 - 38

Get sequence
Deep sequencing 35913 reads, 6 experiments
Evidence experimental; cloned [1-4], Solexa [5,7], CLIPseq [6]
Validated targets
Predicted targets

Mature sequence cel-miR-71-3p

Accession MIMAT0015107
Previous IDs cel-miR-71*
Sequence

53 -  

uaucacuauucuguuuuucgc

 - 73

Get sequence
Deep sequencing 470 reads, 6 experiments
Evidence experimental; CLIPseq [6], Solexa [7]
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3
PMID:12747828 "MicroRNAs and other tiny endogenous RNAs in C. elegans" Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D Curr Biol. 13:807-818(2003).
4
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
5
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
6
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
7
PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).