Stem-loop sequence cel-mir-66

Accession MI0000037
Description Caenorhabditis elegans miR-66 stem-loop
Stem-loop 
------     aaa       aca        a        g    gaauguu 
      ccaca   augccau   ugacacug uuagggau ugau       a
      |||||   |||||||   |||||||| |||||||| ||||        
      ggugu   ugcggua   acuguggc aauccuua acua       a
gauguu     --a       caa        -        a    gcccuag
Get sequence
Deep sequencing
28229 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
III: 2173098-2173196 [+]
sense
Y48G9A.3 ; Y48G9A.3; intron 11
Y48G9A.3 ; Y48G9A.3; intron 11
Y48G9A.3 ; Y48G9A.3; intron 11
Clustered miRNAs
< 10kb from cel-mir-66
cel-mir-229 III: 2172442-2172556 [+]
cel-mir-64 III: 2172838-2172947 [+]
cel-mir-65 III: 2172992-2173091 [+]
cel-mir-66 III: 2173098-2173196 [+]
Database links

Mature sequence cel-miR-66-5p

Accession MIMAT0000038
Previous IDs cel-miR-66
Sequence

17 -  

caugacacugauuagggauguga

 - 39

Get sequence
Deep sequencing 28185 reads, 6 experiments
Evidence experimental; cloned [1-3], Northern [1], Solexa [4-5]
Validated targets
Predicted targets

Mature sequence cel-miR-66-3p

Accession MIMAT0020315
Previous IDs cel-miR-66*
Sequence

60 -  

aaauuccuaacggugucaaac

 - 80

Get sequence
Deep sequencing 43 reads, 6 experiments
Evidence experimental; Solexa [5]
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
4
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
5
PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).