Stem-loop sequence cel-mir-63

Accession MI0000034
Description Caenorhabditis elegans miR-63 stem-loop
Gene family MIPF0000823; mir-63
Stem-loop 
-ucaa    c   --   a             --    a     --c     agc 
     caag aga  cac auuucuaacucgu  cggu gucau   guucu   u
     |||| |||  ||| |||||||||||||  |||| |||||   |||||    
     guuc ucu  gug uaaagguugagcg  guca cagua   cagga   g
aacga    a   ug   a             aa    -     uca     aaa
Get sequence
Deep sequencing
1034 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
X: 17598689-17598792 [-]
intergenic
Database links

Mature sequence cel-miR-63-5p

Accession MIMAT0015104
Previous IDs cel-miR-63*
Sequence

20 -  

ucuaacucgucgguaguca

 - 38

Get sequence
Deep sequencing 96 reads, 5 experiments
Evidence experimental; CLIPseq [5]
Predicted targets

Mature sequence cel-miR-63-3p

Accession MIMAT0000035
Previous IDs cel-miR-63
Sequence

61 -  

uaugacacugaagcgaguuggaaa

 - 84

Get sequence
Deep sequencing 938 reads, 6 experiments
Evidence experimental; cloned [1-3], Solexa [4], CLIPseq [5]
Validated targets
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
4
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
5
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).