Stem-loop sequence cel-mir-61

Accession MI0000032
Description Caenorhabditis elegans miR-61 stem-loop
Gene family MIPF0000297; mir-61
Stem-loop 
uuccauu         -             u    gg  u    c  -  uc 
       aucgcugaa ccucgagaugggu acgg  cu aguc uu cc  c
       ||||||||| ||||||||||||| ||||  || |||| || ||  g
       uaguggcuu ggagcucuacuca ugcc  ga ucag aa gg  u
-------         u             u    aa  -    u  c  ua
Get sequence
Deep sequencing
2926 reads, 6 experiments
Comments

The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [4].

Genome context
Coordinates (WBcel215) Overlapping transcripts
V: 11770042-11770138 [-]
intergenic
Clustered miRNAs
< 10kb from cel-mir-61
cel-mir-61 V: 11770042-11770138 [-]
cel-mir-250 V: 11769899-11769997 [-]
Database links

Mature sequence cel-miR-61-5p

Accession MIMAT0015103
Previous IDs cel-miR-61*
Sequence

25 -  

uggguuacggggcuuagucc

 - 44

Get sequence
Deep sequencing 48 reads, 5 experiments
Evidence experimental; CLIPseq [6]
Predicted targets

Mature sequence cel-miR-61-3p

Accession MIMAT0000033
Previous IDs cel-miR-61
Sequence

61 -  

ugacuagaaccguuacucauc

 - 81

Get sequence
Deep sequencing 2877 reads, 6 experiments
Evidence experimental; cloned [1-4], Solexa [5], CLIPseq [6]
Validated targets
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3
PMID:12747828 "MicroRNAs and other tiny endogenous RNAs in C. elegans" Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D Curr Biol. 13:807-818(2003).
4
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
5
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
6
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).