Stem-loop sequence cel-mir-53

Accession MI0000024
Description Caenorhabditis elegans miR-53 stem-loop
Gene family MIPF0000160; mir-52
Stem-loop 
-----      - --    a u c       cau    uu     c    -  u 
     ccgauu c  ugac g c acccgua   uugu  ccgug uuga cu c
     |||||| |  |||| | | |||||||   ||||  ||||| |||| ||  
     ggcuga g  acug c g uggguau   aaca  ggcac aacu ga a
uuuaa      u uu    a c c       -au    -c     u    c  a
Get sequence
Deep sequencing
61016 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
IV: 11027572-11027670 [-]
intergenic
Clustered miRNAs
< 10kb from cel-mir-53
cel-mir-53 IV: 11027572-11027670 [-]
cel-mir-51 IV: 11025992-11026091 [-]
Database links

Mature sequence cel-miR-53-5p

Accession MIMAT0000024
Previous IDs cel-miR-53
Sequence

16 -  

cacccguacauuuguuuccgugcu

 - 39

Get sequence
Deep sequencing 60810 reads, 6 experiments
Evidence experimental; cloned [1-3], Solexa [4,6], CLIPseq [5]
Validated targets
Predicted targets

Mature sequence cel-miR-53-3p

Accession MIMAT0020312
Previous IDs cel-miR-53*
Sequence

57 -  

cacggcacaauauaugggucgc

 - 78

Get sequence
Deep sequencing 206 reads, 5 experiments
Evidence experimental; Solexa [6]
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
4
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
5
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
6
PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).