Stem-loop sequence cel-mir-45

Accession MI0000016
Description Caenorhabditis elegans miR-45 stem-loop
Gene family MIPF0000132; mir-44
Stem-loop 
---caccau      c          -   gu        aua    ccac 
         gugcca gcuggaugug cuc  uagucaua   uccu    a
         |||||| |||||||||| |||  ||||||||   ||||     
         cgcggu cgacuuacac gag  aucaguau   agga    a
uacguaagc      u          a   --        --c    acga
Get sequence
Deep sequencing
11882 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
II: 11880881-11880976 [-]
antisense
ZK930.13 ; ZK930.13; exon 1
Clustered miRNAs
< 10kb from cel-mir-45
cel-mir-44 II: 11889960-11890055 [+]
cel-mir-43 II: 11889847-11889944 [+]
cel-mir-42 II: 11889748-11889842 [+]
cel-mir-45 II: 11880881-11880976 [-]
Database links

Mature sequence cel-miR-45-5p

Accession MIMAT0020772
Sequence

15 -  

cuggaugugcucguuagucaua

 - 36

Get sequence
Deep sequencing 201 reads, 6 experiments
Evidence experimental; Solexa [7]
Predicted targets

Mature sequence cel-miR-45-3p

Accession MIMAT0000016
Previous IDs cel-miR-45
Sequence

61 -  

ugacuagagacacauucagcu

 - 81

Get sequence
Deep sequencing 11681 reads, 6 experiments
Evidence experimental; cloned [1-4], Northern [1], Solexa [5,7], CLIPseq [6]
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3
PMID:12747828 "MicroRNAs and other tiny endogenous RNAs in C. elegans" Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D Curr Biol. 13:807-818(2003).
4
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
5
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
6
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
7
PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).