miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0020918
Stem-loop ID	osa-MIR444a
Mature ID	osa-miR444a-5p
Reads	osa-miR444a-5p osa-miR444a-3p.2 osa-miR444a-3p.1 Count RPM (mean number of reads per million) ..................AGCUAGAGGUGGCAACUGCAU............................................................................................ 42 9.99 ..................AGCUAGAGGUGGCAACUGCA............................................................................................. 40 9.52 ..................AGCUAGAGGUGGCAACUGCAUA........................................................................................... 22 5.18 ...................GCUAGAGGUGGCAACUGCAUA........................................................................................... 60 258 ...................GCUAGAGGUGGCAACUGCAUAAUU........................................................................................ 48 11.4 ...................GCUAGAGGUGGCAACUGCAU............................................................................................ 41 24.5 ....................CUAGAGGUGGCAACUGCAUA........................................................................................... 41 24.5 ....................CUAGAGGUGGCAACUGCAUAA.......................................................................................... 21 4.95 .....................UAGAGGUGGCAACUGCAUAAUU........................................................................................ 45 22.3 .....................UAGAGGUGGCAACUGCAUAAU......................................................................................... 44 36.8 .....................UAGAGGUGGCAACUGCAUAA.......................................................................................... 40 9.52 ......................AGAGGUGGCAACUGCAUAAUU........................................................................................ 42 9.99 ......................AGAGGUGGCAACUGCAUAAU......................................................................................... 20 4.71 ......................AGAGGUGGCAACUGCAUAA.......................................................................................... 19 4.48 ......................AGAGGUGGCAACUGCAUA........................................................................................... 18 4.24 ........................AGGUGGCAACUGCAUAAUUUGCAA................................................................................... 49 23.3 ........................AGGUGGCAACUGCAUAAUUUG...................................................................................... 42 9.99 ..........................GUGGCAACUGCAUAAUUUGCA.................................................................................... 42 9.99 ...........................UGGCAACUGCAUAAUUUGCAAGAA................................................................................ 24 5.77 ..................................................................................CUUGCAAGUUAUGCAGUUGCUGCC......................... 48 11.4 .....................................................................................GCAAGUUAUGCAGUUGCUGCCUCA...................... 5 75 ......................................................................................CAAGUUAUGCAGUUGCUGCCU........................ 113 989 ......................................................................................CAAGUUAUGCAGUUGCUGCCUC....................... 49 76 ......................................................................................CAAGUUAUGCAGUUGCUGCC......................... 40 9.52 .......................................................................................AAGUUAUGCAGUUGCUGCCU........................ 40 9.52 .......................................................................................AAGUUAUGCAGUUGCUGCCUC....................... 1 11.8 ........................................................................................AGUUAUGCAGUUGCUGCCUCAAGC................... 24 5.77 ........................................................................................AGUUAUGCAGUUGCUGCCUCA...................... 21 5.05 ........................................................................................AGUUAUGCAGUUGCUGCCU........................ 19 4.57 .........................................................................................GUUAUGCAGUUGCUGCCU........................ 1 11.8 ..........................................................................................UUAUGCAGUUGCUGCCUCAAGC................... 44 10.5 ..........................................................................................UUAUGCAGUUGCUGCCUCAA..................... 20 4.81 ..........................................................................................UUAUGCAGUUGCUGCCUCAAG.................... 1 15 ...........................................................................................UAUGCAGUUGCUGCCUCAAGCUUG................ 48 11.4 ...........................................................................................UAUGCAGUUGCUGCCUCAAGC................... 21 5.05 ............................................................................................AUGCAGUUGCUGCCUCAAGCUU................. 23 17 ............................................................................................AUGCAGUUGCUGCCUCAAGC................... 20 4.81 .............................................................................................UGCAGUUGCUGCCUCAAGCUU................. 58 212 .............................................................................................UGCAGUUGCUGCCUCAAGCU.................. 40 9.52 .............................................................................................UGCAGUUGCUGCCUCAAGC................... 38 9.04 ..............................................................................................GCAGUUGCUGCCUCAAGCUUG................ 42 9.99 ..............................................................................................GCAGUUGCUGCCUCAAGCUU................. 40 9.52 ..............................................................................................GCAGUUGCUGCCUCAAGC................... 18 4.24 ................................................................................................AGUUGCUGCCUCAAGCUUGCUG............. 23 20.2 .................................................................................................GUUGCUGCCUCAAGCUUGCUG............. 1 15 ..................................................................................................UUGCUGCCUCAAGCUUGCUGC............ 42 9.99 ...................................................................................................UGCUGCCUCAAGCUUGCUGCC........... 44 33.7 AUGCAAUUGGGGGCAGCAAGCUAGAGGUGGCAACUGCAUAAUUUGCAAGAAAUUGUUGGCUGAAGAUCAUACCGAUGAUAUUCUUGCAAGUUAUGCAGUUGCUGCCUCAAGCUUGCUGCCUCCUGUUGCCA ..(((((.((((((((((((((.((((..((((((((((((((((((((((((..((((.((.....))..))))..)).))))))))))))))))))))))..)))).)))))))))))))).))))).. (-90.80)

                  osa-miR444a-5p                                                          osa-miR444a-3p.2osa-miR444a-3p.1                      Count     RPM (mean number of reads per million)
..................AGCUAGAGGUGGCAACUGCAU............................................................................................  42        9.99
..................AGCUAGAGGUGGCAACUGCA.............................................................................................  40        9.52
..................AGCUAGAGGUGGCAACUGCAUA...........................................................................................  22        5.18
...................GCUAGAGGUGGCAACUGCAUA...........................................................................................  60        258
...................GCUAGAGGUGGCAACUGCAUAAUU........................................................................................  48        11.4
...................GCUAGAGGUGGCAACUGCAU............................................................................................  41        24.5
....................CUAGAGGUGGCAACUGCAUA...........................................................................................  41        24.5
....................CUAGAGGUGGCAACUGCAUAA..........................................................................................  21        4.95
.....................UAGAGGUGGCAACUGCAUAAUU........................................................................................  45        22.3
.....................UAGAGGUGGCAACUGCAUAAU.........................................................................................  44        36.8
.....................UAGAGGUGGCAACUGCAUAA..........................................................................................  40        9.52
......................AGAGGUGGCAACUGCAUAAUU........................................................................................  42        9.99
......................AGAGGUGGCAACUGCAUAAU.........................................................................................  20        4.71
......................AGAGGUGGCAACUGCAUAA..........................................................................................  19        4.48
......................AGAGGUGGCAACUGCAUA...........................................................................................  18        4.24
........................AGGUGGCAACUGCAUAAUUUGCAA...................................................................................  49        23.3
........................AGGUGGCAACUGCAUAAUUUG......................................................................................  42        9.99
..........................GUGGCAACUGCAUAAUUUGCA....................................................................................  42        9.99
...........................UGGCAACUGCAUAAUUUGCAAGAA................................................................................  24        5.77
..................................................................................CUUGCAAGUUAUGCAGUUGCUGCC.........................  48        11.4
.....................................................................................GCAAGUUAUGCAGUUGCUGCCUCA......................  5         75
......................................................................................CAAGUUAUGCAGUUGCUGCCU........................  113       989
......................................................................................CAAGUUAUGCAGUUGCUGCCUC.......................  49        76
......................................................................................CAAGUUAUGCAGUUGCUGCC.........................  40        9.52
.......................................................................................AAGUUAUGCAGUUGCUGCCU........................  40        9.52
.......................................................................................AAGUUAUGCAGUUGCUGCCUC.......................  1         11.8
........................................................................................AGUUAUGCAGUUGCUGCCUCAAGC...................  24        5.77
........................................................................................AGUUAUGCAGUUGCUGCCUCA......................  21        5.05
........................................................................................AGUUAUGCAGUUGCUGCCU........................  19        4.57
.........................................................................................GUUAUGCAGUUGCUGCCU........................  1         11.8
..........................................................................................UUAUGCAGUUGCUGCCUCAAGC...................  44        10.5
..........................................................................................UUAUGCAGUUGCUGCCUCAA.....................  20        4.81
..........................................................................................UUAUGCAGUUGCUGCCUCAAG....................  1         15
...........................................................................................UAUGCAGUUGCUGCCUCAAGCUUG................  48        11.4
...........................................................................................UAUGCAGUUGCUGCCUCAAGC...................  21        5.05
............................................................................................AUGCAGUUGCUGCCUCAAGCUU.................  23        17
............................................................................................AUGCAGUUGCUGCCUCAAGC...................  20        4.81
.............................................................................................UGCAGUUGCUGCCUCAAGCUU.................  58        212
.............................................................................................UGCAGUUGCUGCCUCAAGCU..................  40        9.52
.............................................................................................UGCAGUUGCUGCCUCAAGC...................  38        9.04
..............................................................................................GCAGUUGCUGCCUCAAGCUUG................  42        9.99
..............................................................................................GCAGUUGCUGCCUCAAGCUU.................  40        9.52
..............................................................................................GCAGUUGCUGCCUCAAGC...................  18        4.24
................................................................................................AGUUGCUGCCUCAAGCUUGCUG.............  23        20.2
.................................................................................................GUUGCUGCCUCAAGCUUGCUG.............  1         15
..................................................................................................UUGCUGCCUCAAGCUUGCUGC............  42        9.99
...................................................................................................UGCUGCCUCAAGCUUGCUGCC...........  44        33.7
AUGCAAUUGGGGGCAGCAAGCUAGAGGUGGCAACUGCAUAAUUUGCAAGAAAUUGUUGGCUGAAGAUCAUACCGAUGAUAUUCUUGCAAGUUAUGCAGUUGCUGCCUCAAGCUUGCUGCCUCCUGUUGCCA
..(((((.((((((((((((((.((((..((((((((((((((((((((((((..((((.((.....))..))))..)).))))))))))))))))))))))..)))).)))))))))))))).))))).. (-90.80)

miRBase

Deep sequencing reads for mature sequence MIMAT0020918

Filter reads

References

References
1	PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).
2	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).