Deep sequencing reads for mature sequence MIMAT0020916

Stem-loop ID

osa-MIR169f

Mature ID

osa-miR169f.2

Reads

          osa-miR169f.2        osa-miR169f.1                                                                                                                                                                            Count     RPM (mean number of reads per million)
.........gUagccAaggauGacuugcCua.......................................................................................................................................................................................  2         30
..........UagccAaggauGacuugcCua.......................................................................................................................................................................................  2575      3.31e+04
..........UagccAaggauGacuugcCu........................................................................................................................................................................................  58        238
..........UGAGGACAAGAGCUGAUUCGG.......................................................................................................................................................................................  42        9.99
..........UagccAaggauGacuugcC.........................................................................................................................................................................................  38        9.04
..........UagccAaggauGacuugc..........................................................................................................................................................................................  36        8.57
..........UagccAaggauGacuugcCuaa......................................................................................................................................................................................  27        323
...........agccAaggauGacuugcCua.......................................................................................................................................................................................  47        92.4
...........GAGGACAAGAGCUGAUUCGG.......................................................................................................................................................................................  40        9.52
...........agccAaggauGacuugcCu........................................................................................................................................................................................  1         11.8
............gccAaggauGacuugcCua.......................................................................................................................................................................................  19        4.57
GGGCCUUCCAUGAGGACAAGAGCUGAUUCGGUAGCCAAGGAUGACUUGCCUAAUGCCUAUGUGCAUGUGUUUAUACGCUGCUCAUCUGCAUUUUGAUUAUCCCCUGAUCAGUCCUGUCGUCAAUUAUAUGUGUGUGUAGUACUCUGUACUCAUACAUAUAUAGGCAUGUCUUCCUUGGCUAUUCGGAGCGGCUCUUGUCUCUCGUGGAAGGCUG
.((((((((((((((((((((((((.(((((((((((((((.(((.((((.(((((..(((.(((.((((....))))))).)))..)))))(((((((.....))))))).............((((((((((((.(((((...))))))))))))))))))))).))).)))))))))).))))).))))))))))).))))))))))))). (-113.10)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000008	2509	whole body	GEO : GSM407071		[ Johnson C et al.]
ER0000000009	3241	whole body	GEO : GSM407072		[ Johnson C et al.]
ER0000000201	943	whole body	GEO : GSM571077	strain: indica 93-11, age: 12-day-old, stress: control	[ Li T et al.]
ER0000000202	1299	whole body	GEO : GSM571078	strain: indica 93-11, stress: H2O2	[ Li T et al.]

References

1. PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).
2. PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).