Deep sequencing reads for mature sequence MIMAT0020635

Stem-loop ID mmu-mir-5125
Mature ID mmu-miR-5125
Reads 
                                                 mmu-miR-5125                    Count     RPM (mean number of reads per million)
............UAAGGAGAGCCCCAUGCCUUUGG............................................  10        0.191
............UAAGGAGAGCCCCAUGCCUUUG.............................................  4         0.0472
...............................................UUCUGCCUGGGAUUUCCUUGU...........  7         0.226
...............................................UUCUGCCUGGGAUUUCCUUG............  1         0.0432
CGCCUUGCAGUCUAAGGAGAGCCCCAUGCCUUUGGACAUGCUGUUCCUUCUGCCUGGGAUUUCCUUGUCUGCCUGGUGA
((((..((((.(.(((((((..((((.((....(((........)))....)).)))).)))))))).))))..)))). (-33.30)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000038 1brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000040 1brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000046 1whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000052 2whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000054 1embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000058 1embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 2embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000063 1embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000217 2bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000231 1bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 1peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 1peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 1bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000237 1thymus GEO : GSM539856
ER0000000244 1spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 1lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 1lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 1 GEO : GSM539866 strain: C57BL/6-129
ER0000000252 1liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000257 2salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).