Deep sequencing reads for mature sequence MIMAT0020606

Stem-loop ID mmu-mir-5099
Mature ID mmu-miR-5099
Reads 
                                              mmu-miR-5099                  Count     RPM (mean number of reads per million)
...........................................GCUUAGAUCGAUGUGGUGCUCC.........  1         0.00241
...........................................GCUUAGAUCGAUGUGGUGC............  1         0.0075
............................................CUUAGAUCGAUGUGGUGCUCC.........  87        0.562
............................................CUUAGAUCGAUGUGGUGCU...........  51        0.234
............................................CUUAGAUCGAUGUGGUGC............  12        0.0531
............................................CUUAGAUCGAUGUGGUGCUC..........  11        0.0452
............................................CUUAGAUCGAUGUGGUGCUCCUGA......  1         0.00471
.............................................UUAGAUCGAUGUGGUGCUCC.........  111       0.632
.............................................UUAGAUCGAUGUGGUGCUC..........  16        0.331
.............................................UUAGAUCGAUGUGGUGC............  14        0.0965
.............................................UUAGAUCGAUGUGGUGCU...........  6         0.0574
.............................................UUAGAUCGAUGUGGUGCUCCUGAGUUC..  1         0.00471
..............................................UAGAUCGAUGUGGUGCUCC.........  202       1.02
..............................................UAGAUCGAUGUGGUGCU...........  16        0.297
..............................................UAGAUCGAUGUGGUGCUC..........  6         0.134
..............................................UAGAUCGAUGUGGUGCUCCUGAG.....  2         0.0321
..............................................UAGAUCGAUGUGGUGCUCCUGAGU....  2         0.00777
..............................................UAGAUCGAUGUGGUGCUCCU........  2         0.00525
..............................................UAGAUCGAUGUGGUGCUCCUGA......  1         0.00263
..............................................UAGAUCGAUGUGGUGCUCCUGAGUUC..  1         0.00508
...............................................AGAUCGAUGUGGUGCUCC.........  3         0.0292
...............................................AGAUCGAUGUGGUGCUC..........  1         0.0129
...............................................AGAUCGAUGUGGUGCUCCUGA......  1         0.00288
................................................GAUCGAUGUGGUGCUCC.........  44        0.476
................................................GAUCGAUGUGGUGCUCCUGA......  15        0.0818
................................................GAUCGAUGUGGUGCUCCUGAG.....  6         0.0251
................................................GAUCGAUGUGGUGCUCCUGAGU....  6         0.0244
................................................GAUCGAUGUGGUGCUCCUGAGUUC..  5         0.0462
................................................GAUCGAUGUGGUGCUCCUG.......  2         0.00734
................................................GAUCGAUGUGGUGCUCCUGAGUU...  2         0.00786
................................................GAUCGAUGUGGUGCUCCUGAGUUCU.  2         0.0151
.................................................AUCGAUGUGGUGCUCCUGA......  75        0.353
.................................................AUCGAUGUGGUGCUCCUGAGU....  29        0.124
.................................................AUCGAUGUGGUGCUCCUGAG.....  27        0.109
.................................................AUCGAUGUGGUGCUCCUGAGUUC..  24        0.11
.................................................AUCGAUGUGGUGCUCCUGAGUUCU.  22        0.102
.................................................AUCGAUGUGGUGCUCCUGAGUU...  20        0.092
.................................................AUCGAUGUGGUGCUCCUGAGUUCUC  6         0.0278
AGAAUUCAGUUAGAAAUUACAUUGAUUUAAGAAGUGGUAAUGGGCUUAGAUCGAUGUGGUGCUCCUGAGUUCUC
(((((((((...((.((((((((((((((((..((....))...))))))))))))))))..))))))))))). (-27.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 26ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 35ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 6ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 40testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 112testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 159testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 17testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 14brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 23brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 60brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 3brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 211brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 9whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 38whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 46whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 9whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 140whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 215whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 236whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 216whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 233whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 203whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 190whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 869whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 66embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 211embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 408embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 68embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 201embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 376embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 673embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 51embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 248embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 409embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 749embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 220bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 196bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 341spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 743spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 491spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 2610spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 4078spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 3870spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 1435spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 188peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 375spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 1181lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 153lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 506bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 29bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 115bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 61peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 5peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 26bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 137bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 710spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 257thymus GEO : GSM539856
ER0000000238 136spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 164spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 2138spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 563lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 341lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 123lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 689spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 163lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 183lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 832 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 751 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 4heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 4brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 6lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 6liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 19kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 31pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 50skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 35skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 56salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 76testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 44ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 923spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 635lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).