Deep sequencing reads for mature sequence MIMAT0020532

Stem-loop ID ath-MIR5026
Mature ID ath-miR5026
Reads
                                                                                                                      ath-miR5026                                                                 Count     RPM (mean number of reads per million)
......................ACGUGUCAAAAUCUGAGAUCGAUA...................................................................................................................................................  1         6.73
....................................GAGAUCGAUAAAUUUAACUCGUGG.....................................................................................................................................  10        70.8
...............................................AUUUAACUCGUGGCACGACCCUG...........................................................................................................................  1         3.56
..................................................UAACUCGUGGCACGACCCUGUGA........................................................................................................................  4         13
..................................................UAACUCGUGGCACGACCCUGUGAG.......................................................................................................................  2         13.5
...................................................AACUCGUGGCACGACCCUGUGAGU......................................................................................................................  5         33.7
.....................................................CUCGUGGCACGACCCUGUGAG.......................................................................................................................  2         7.11
......................................................UCGUGGCACGACCCUGUGAGUU.....................................................................................................................  3         0.309
......................................................UCGUGGCACGACCCUGUGAGUUAC...................................................................................................................  1         3.56
........................................................GUGGCACGACCCUGUGAGUU.....................................................................................................................  8         0.825
........................................................GUGGCACGACCCUGUGAGUUA....................................................................................................................  1         3.28
.........................................................UGGCACGACCCUGUGAGUUAC...................................................................................................................  6         19.5
................................................................ACCCUGUGAGUUACUAACUUUGAA.........................................................................................................  1         3.56
...................................................................CUGUGAGUUACUAACUUUGAA.........................................................................................................  1         3.28
.............................................................................CUAACUUUGAAAACCAUAGCAUA.............................................................................................  1         3.1
..............................................................................................................UUAGUAACUCAUAAGAUCGUG..............................................................  1         0.103
...............................................................................................................UAGUAACUCAUAAGAUCGUGACAC..........................................................  2         10.4
................................................................................................................AGUAACUCAUAAGAUCGUGA.............................................................  1         6.73
................................................................................................................AGUAACUCAUAAGAUCGUGACA...........................................................  1         6.73
.................................................................................................................GUAACUCAUAAGAUCGUGACACGU........................................................  3         20.2
..................................................................................................................UAACUCAUAAGAUCGUGACAC..........................................................  9         29.5
..................................................................................................................UAACUCAUAAGAUCGUGACACGUG.......................................................  1         6.73
...................................................................................................................AACUCAUAAGAUCGUGACACGUGG......................................................  5         33.7
...................................................................................................................AACUCAUAAGAUCGUGACACGU........................................................  4         34.7
...................................................................................................................AACUCAUAAGAUCGUGACACGUGGU.....................................................  2         13.5
...................................................................................................................AACUCAUAAGAUCGUGACACGUG.......................................................  1         6.73
....................................................................................................................ACUCAUAAGAUCGUGACACGU........................................................  233       1.38e+03
....................................................................................................................ACUCAUAAGAUCGUGACACGUGGU.....................................................  70        461
....................................................................................................................ACUCAUAAGAUCGUGACACGUGGUA....................................................  3         20.2
....................................................................................................................ACUCAUAAGAUCGUGACACGUG.......................................................  2         13.5
....................................................................................................................ACUCAUAAGAUCGUGACACGUGG......................................................  2         13.5
.....................................................................................................................CUCAUAAGAUCGUGACACGU........................................................  222       65.7
......................................................................................................................UCAUAAGAUCGUGACACGU........................................................  1         8.67
........................................................................................................................AUAAGAUCGUGACACGUGGUAAAU.................................................  1         6.73
..........................................................................................................................AAGAUCGUGACACGUGGUAAAUCU...............................................  11        74.1
...........................................................................................................................AGAUCGUGACACGUGGUAAAUCUA..............................................  5         33.7
...........................................................................................................................AGAUCGUGACACGUGGUAAA..................................................  1         6.73
...........................................................................................................................AGAUCGUGACACGUGGUAAAUCU...............................................  1         6.73
.............................................................................................................................AUCGUGACACGUGGUAAAUCU...............................................  1         8.67
.........................................................................................................................................GGUAAAUCUAUUGAUUUUAGAUUU................................  3         20.2
..................................................................................................................................................AUUGAUUUUAGAUUUUGAUAUGUG.......................  1         6.73
...................................................................................................................................................UUGAUUUUAGAUUUUGAUAUGUG.......................  2         7.11
...................................................................................................................................................UUGAUUUUAGAUUUUGAUAUGUGU......................  1         3.56
.......................................................................................................................................................UUUUAGAUUUUGAUAUGUGUAAAA..................  1         7.08
AUAAAAAGAAAAUUAUAUUUACACGUGUCAAAAUCUGAGAUCGAUAAAUUUAACUCGUGGCACGACCCUGUGAGUUACUAACUUUGAAAACCAUAGCAUAGUUUUCAAAGUUAGUAACUCAUAAGAUCGUGACACGUGGUAAAUCUAUUGAUUUUAGAUUUUGAUAUGUGUAAAACAAAAUUUUCAUUUUUAU
((((((((((((((...(((((((((((((((((((((((((((((.(((((.(.((((.(((((.(.(((((((((((((((((((((((.........))))))))))))))))))))))).).))))).)))).).))))).)))))))))))))))))))))))))))))....))))))).))))))) (-92.10)

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by experiment
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References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).