Deep sequencing reads for mature sequence MIMAT0020314

Stem-loop ID

cel-mir-57

Mature ID

cel-miR-57-3p

Reads

                 cel-miR-57-5p                         cel-miR-57-3p                                  Count     RPM (mean number of reads per million)
..............CUACCCUGUAGAUCGAGCUGUGUGU............................................................  4         6.71
..............CUACCCUGUAGAUCGAGCUGUGUG.............................................................  1         1.9
...............UACCCUGUAGAUCGAGCUGUGUGU............................................................  5369      3.88e+03
...............UACCCUGUAGAUCGAGCUGUGUG.............................................................  311       298
...............UACCCUGUAGAUCGAGCUGUGU..............................................................  170       173
...............UACCCUGUAGAUCGAGCUGUGUGUU...........................................................  47        30.4
...............UACCCUGUAGAUCGAGCUGUG...............................................................  35        45.1
...............UACCCUGUAGAUCGAGCUGU................................................................  14        16.9
...............UACCCUGUAGAUCGAGCUG.................................................................  8         15.2
...............UACCCUGUAGAUCGAGCU..................................................................  3         5.7
...............UACCCUGUAGAUCGAGCUGUGUGUUU..........................................................  1         0.463
................ACCCUGUAGAUCGAGCUGUGUGU............................................................  3         3.1
.................CCCUGUAGAUCGAGCUGUGUGU............................................................  5         2.91
..................CCUGUAGAUCGAGCUGUGUGU............................................................  6         7.87
...................CUGUAGAUCGAGCUGUGUGU............................................................  27        48.2
...................CUGUAGAUCGAGCUGUGUG.............................................................  3         3.18
....................UGUAGAUCGAGCUGUGUGU............................................................  4         6.62
.....................GUAGAUCGAGCUGUGUGU............................................................  12        19
.....................................................CACGAGCUAGACUACAAGGUGCA.......................  3         1.39
......................................................ACGAGCUAGACUACAAGGUGCA.......................  35        16.8
......................................................ACGAGCUAGACUACAAGGUGC........................  2         1.71
.......................................................CGAGCUAGACUACAAGGUGCA.......................  1         0.463
AUCGACAUGCUCGUCUACCCUGUAGAUCGAGCUGUGUGUUUGAAACAAUCAUACACGAGCUAGACUACAAGGUGCACGAACAAACCGAAGAUUUAUGAA
.(((...((.((((.((((.(((((.((.((((.(((((.(((.....))).))))))))).))))))).)))).)))).))...)))........... (-32.50)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000024	20	whole body	GEO : GSM378784		[ de Wit E et al.]
ER0000000203	151	adult	GEO : GSM604032	strain: N2 wild-type, age: Day 0	[ de Lencastre A et al.]
ER0000000204	440	adult	GEO : GSM604033	strain: N2 wild-type, age: Day 10	[ de Lencastre A et al.]
ER0000000205	423	adult	GEO : GSM604034	strain: daf-2(e1379) mutant, age: Day 0	[ de Lencastre A et al.]
ER0000000206	579	adult	GEO : GSM604035	strain: daf-2(e1379) mutant, age: Day 10	[ de Lencastre A et al.]
ER0000000212	5064	whole body	GEO : GSM139137	mixed-stage	[ Ruby JG et al.]

References

1. PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2. PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).
3. PMID:21129974 "MicroRNAs both promote and antagonize longevity in C. elegans" de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, Slack FJ Curr Biol. 20:2159-2168(2010).