Deep sequencing reads for mature sequence MIMAT0020308

Stem-loop ID

cel-mir-43

Mature ID

cel-miR-43-5p

Reads

                      cel-miR-43-5p                          cel-miR-43-3p                          Count     RPM (mean number of reads per million)
....................GACAUCAAGAAACUAGUGAUUAUG......................................................  3         2.5
....................GACAUCAAGAAACUAGUGAUUA........................................................  1         1.58
...........................................................AUAUCACAGUUUACUUGCUGUCGC...............  12        8.7
...........................................................AUAUCACAGUUUACUUGCUGUCG................  1         0.463
............................................................UAUCACAGUUUACUUGCUGUCGC...............  3020      1.83e+03
............................................................UAUCACAGUUUACUUGCUGUCG................  46        34.3
............................................................UAUCACAGUUUACUUGCUGUC.................  4         5.69
............................................................UAUCACAGUUUACUUGCUGU..................  3         4.21
............................................................UAUCACAGUUUACUUGCUGUCGCG..............  1         1.58
............................................................UAUCACAGUUUACUUGCU....................  1         1.06
.............................................................AUCACAGUUUACUUGCUGUCGC...............  4         5.6
..............................................................UCACAGUUUACUUGCUGUCGC...............  1         0.463
.................................................................CAGUUUACUUGCUGUCGC...............  2         0.927
UAUUGGCACUAGUCGCCCGUGACAUCAAGAAACUAGUGAUUAUGCCAAACCACAGGGACAUAUCACAGUUUACUUGCUGUCGCGGGCGGUGCUGAGUU
..(..((((....(((((((((((.(((((((((.(((((.(((((.........)).))))))))))))).)))).)))))))))))))))..)... (-47.00)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000024	23	whole body	GEO : GSM378784		[ de Wit E et al.]
ER0000000203	63	adult	GEO : GSM604032	strain: N2 wild-type, age: Day 0	[ de Lencastre A et al.]
ER0000000204	44	adult	GEO : GSM604033	strain: N2 wild-type, age: Day 10	[ de Lencastre A et al.]
ER0000000205	167	adult	GEO : GSM604034	strain: daf-2(e1379) mutant, age: Day 0	[ de Lencastre A et al.]
ER0000000206	126	adult	GEO : GSM604035	strain: daf-2(e1379) mutant, age: Day 10	[ de Lencastre A et al.]
ER0000000212	3057	whole body	GEO : GSM139137	mixed-stage	[ Ruby JG et al.]

References

1. PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2. PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).
3. PMID:21129974 "MicroRNAs both promote and antagonize longevity in C. elegans" de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, Slack FJ Curr Biol. 20:2159-2168(2010).