Deep sequencing reads for mature sequence MIMAT0020167

Stem-loop ID

dme-mir-4952

Mature ID

dme-miR-4952-3p

Reads

                                 dme-miR-4952-5p                         dme-miR-4952-3p                                        Count     RPM (mean number of reads per million)
.................................AGCCGGAUCCGGAUGUCGCGGCGA.....................................................................  28        1.33
.................................AGCCGGAUCCGGAUGUCGCGGCG......................................................................  4         0.0887
.................................AGCCGGAUCCGGAUGUCGCGG........................................................................  1         0.156
.................................AGCCGGAUCCGGAUGUCGCG.........................................................................  1         0.105
..................................GCCGGAUCCGGAUGUCGCGGCGA.....................................................................  12        0.346
..................................GCCGGAUCCGGAUGUCGC..........................................................................  3         0.0666
..................................GCCGGAUCCGGAUGUCGCGG........................................................................  1         0.156
..................................GCCGGAUCCGGAUGUCGCG.........................................................................  1         0.0595
..................................GCCGGAUCCGGAUGUCGCGGCG......................................................................  1         0.102
...........................................................................GCCGCCAUUCGAAUCGGGUAG..............................  23        1.69
...........................................................................GCCGCCAUUCGAAUCGGGUA...............................  2         0.188
........................................................................................UCGGGUAGCGGGGAUGAU....................  1         0.419
UCCGGGUGCGCUGGACGAUCUGAUCUUCUCGGGAGCCGGAUCCGGAUGUCGCGGCGACGACGAGGACGAGUGCACGCCGCCAUUCGAAUCGGGUAGCGGGGAUGAUCUCAUAACACCGGUCUACGU
.....(((.(((((...((..((((.((((.(..(((.(((.((((((..((((((...((........))...)))))))))))).))).)))..).)))).))))..))....))))).))).. (-46.70)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000010	6	head	GEO : GSM240749		[ Chung WJ et al.]
ER0000000011	1	S2 cell	GEO : GSM272651		[ Chung WJ et al.]
ER0000000013	4	Kc cell	GEO : GSM272653		[ Chung WJ et al.]
ER0000000014	1	imaginal disc	GEO : GSM275691		[ Chung WJ et al.]
ER0000000023	1	embryo	GEO : GSM286613		[ Chung WJ et al.]
ER0000000079	1	whole body	GEO : GSM322208	3rd instar larvae
ER0000000080	5	whole body	GEO : GSM322219	2-4 day old pupae
ER0000000082	1	whole body	GEO : GSM322338	2-4 day old pupae
ER0000000083	21	head	GEO : GSM322533	adult female head
ER0000000084	77	head	GEO : GSM322543	adult male head
ER0000000088	4	whole body	GEO : GSM360262	0-2 day old pupae
ER0000000090	1	whole body	GEO : GSM280082	from 2-4 day old flies
ER0000000100	1	whole body	GEO : GSM399106	female body
ER0000000101	2	whole body	GEO : GSM399107	male body
ER0000000102	1	S2 cell	GEO : GSM371638
ER0000000115	1	head	GEO : GSM180328	adult heads (female heads, male heads)	[ Ruby JG et al.]

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).