miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0019666
Stem-loop ID	osa-MIR812k
Mature ID	osa-miR812k
Reads	osa-miR812k Count RPM (mean number of reads per million) ..........UAAUAAGUGCAGCCAUGAGUUUCC................................................................................................................................................................................................ 48 11.4 ..........UAAUAAGUGCAGCCAUGAGU.................................................................................................................................................................................................... 20 4.81 ............AUAAGUGCAGCCAUGAGUUUCCGC.............................................................................................................................................................................................. 48 11.4 .............UAAGUGCAGCCAUGAGUUUCC................................................................................................................................................................................................ 1 11.8 ..............AAGUGCAGCCAUGAGUUUCCGCGC............................................................................................................................................................................................ 48 11.4 ..............AAGUGCAGCCAUGAGUUUCC................................................................................................................................................................................................ 20 4.81 ...............AGUGCAGCCAUGAGUUUCCGCGCU........................................................................................................................................................................................... 24 5.65 .................UGCAGCCAUGAGUUUCCGCGC............................................................................................................................................................................................ 21 5.05 ...................CAGCCAUGAGUUUCCGCGCUCAAU....................................................................................................................................................................................... 24 5.77 ...........................AGUUUCCGCGCUCAAUUUUGAUCG............................................................................................................................................................................... 24 5.77 ..............................UUCCGCGCUCAAUUUUGAUCGUCC............................................................................................................................................................................ 48 11.4 ..............................UUCCGCGCUCAAUUUUGAUCG............................................................................................................................................................................... 21 5.05 .................................CGCGCUCAAUUUUGAUCGUCCGU.......................................................................................................................................................................... 23 5.53 ..................................GCGCUCAAUUUUGAUCGUCCGUCU........................................................................................................................................................................ 48 11.4 ..................................GCGCUCAAUUUUGAUCGUCCGU.......................................................................................................................................................................... 44 10.5 ..................................GCGCUCAAUUUUGAUCGUCCGUC......................................................................................................................................................................... 23 5.42 ..................................GCGCUCAAUUUUGAUCGUCCG........................................................................................................................................................................... 21 4.95 ....................................GCUCAAUUUUGAUCGUCCGUCUUA...................................................................................................................................................................... 24 5.77 ....................................GCUCAAUUUUGAUCGUCCGUCU........................................................................................................................................................................ 22 5.29 ......................................UCAAUUUUGAUCGUCCGU.......................................................................................................................................................................... 36 8.57 ......................................UCAAUUUUGAUCGUCCGUCUUA...................................................................................................................................................................... 22 5.29 .......................................CAAUUUUGAUCGUCCGUCUUA...................................................................................................................................................................... 42 9.99 .......................................CAAUUUUGAUCGUCCGUCUU....................................................................................................................................................................... 20 4.71 ........................................AAUUUUGAUCGUCCGUCUUAUUU................................................................................................................................................................... 46 10.9 ...............................................................................................AUGAGAUGAUAAAACAUGAAUAGU........................................................................................................... 48 11.4 ................................................................................................UGAGAUGAUAAAACAUGAAUAGU........................................................................................................... 23 5.42 ......................................................................................................GAUAAAACAUGAAUAGUACUUUA..................................................................................................... 23 5.42 ...........................................................................................................................................................AAAAUUUUUAAUAAGACGAACGGU............................................... 24 5.65 ............................................................................................................................................................AAAUUUUUAAUAAGACGAACGGU............................................... 23 5.42 .............................................................................................................................................................AAUUUUUAAUAAGACGAACGGUUA............................................. 24 5.65 ...............................................................................................................................................................UUUUUAAUAAGACGAACGGUU.............................................. 21 5.05 ................................................................................................................................................................UUUUAAUAAGACGAACGGUUAAAG.......................................... 24 5.65 ................................................................................................................................................................UUUUAAUAAGACGAACGGUUAA............................................ 22 5.29 ....................................................................................................................................................................AAUAAGACGAACGGUUAAAGUUGG...................................... 48 11.4 ....................................................................................................................................................................AAUAAGACGAACGGUUAAAGUUG....................................... 23 5.42 ....................................................................................................................................................................AAUAAGACGAACGGUUAAAGUU........................................ 22 5.18 .....................................................................................................................................................................AUAAGACGAACGGUUAAAGUUGGA..................................... 48 11.4 ......................................................................................................................................................................UAAGACGAACGGUUAAAGUUGGAC.................................... 24 5.65 .......................................................................................................................................................................AAGACGAACGGUUAAAGUUGGACG................................... 48 11.4 .......................................................................................................................................................................AAGACGAACGGUUAAAGUUG....................................... 40 9.52 .......................................................................................................................................................................AAGACGAACGGUUAAAGUUGGA..................................... 22 5.18 .......................................................................................................................................................................AAGACGAACGGUUAAAGUUGG...................................... 21 4.95 .......................................................................................................................................................................AAGACGAACGGUUAAAGUU........................................ 19 4.48 .......................................................................................................................................................................AAGACGAACGGUUAAAGU......................................... 18 4.32 ........................................................................................................................................................................AGACGAACGGUUAAAGUUGGACGC.................................. 48 11.4 ........................................................................................................................................................................AGACGAACGGUUAAAGUUGGACG................................... 23 5.53 .........................................................................................................................................................................GACGAACGGUUAAAGUUGGACGCGG................................ 50 11.9 .........................................................................................................................................................................GACGAACGGUUAAAGUUGGACGCG................................. 48 11.4 .........................................................................................................................................................................GACGAACGGUUAAAGUUGGACGCGGA............................... 26 6.13 .........................................................................................................................................................................GACGAACGGUUAAAGUUGGACGC.................................. 23 5.42 ..........................................................................................................................................................................ACGAACGGUUAAAGUUGGACGCGGA............................... 50 11.9 ..........................................................................................................................................................................ACGAACGGUUAAAGUUGGACGCGG................................ 48 11.4 ..........................................................................................................................................................................ACGAACGGUUAAAGUUGGACGCG................................. 46 10.9 ..........................................................................................................................................................................ACGAACGGUUAAAGUUGGACGC.................................. 44 10.5 ..........................................................................................................................................................................ACGAACGGUUAAAGUUGGAC.................................... 20 4.81 ...........................................................................................................................................................................CGAACGGUUAAAGUUGGACGCGGA............................... 48 11.4 ...........................................................................................................................................................................CGAACGGUUAAAGUUGGACGCGG................................ 46 10.9 ............................................................................................................................................................................GAACGGUUAAAGUUGGACGCGGAA.............................. 48 11.4 ............................................................................................................................................................................GAACGGUUAAAGUUGGACGCGG................................ 44 10.5 ............................................................................................................................................................................GAACGGUUAAAGUUGGACG................................... 19 4.57 .............................................................................................................................................................................AACGGUUAAAGUUGGACGCGGAAA............................. 48 11.4 .............................................................................................................................................................................AACGGUUAAAGUUGGACGCGGAAAA............................ 25 6.01 .............................................................................................................................................................................AACGGUUAAAGUUGGACGCGGAA.............................. 23 5.53 .............................................................................................................................................................................AACGGUUAAAGUUGGACGCGG................................ 21 5.05 ..............................................................................................................................................................................ACGGUUAAAGUUGGACGCGGAAAA............................ 48 11.4 ..............................................................................................................................................................................ACGGUUAAAGUUGGACGCGGAAAAC........................... 25 6.01 ..............................................................................................................................................................................ACGGUUAAAGUUGGACGCGG................................ 20 4.71 ...............................................................................................................................................................................CGGUUAAAGUUGGACGCGGAAAAC........................... 48 11.4 ...............................................................................................................................................................................CGGUUAAAGUUGGACGCGGAAAA............................ 23 5.42 ...............................................................................................................................................................................CGGUUAAAGUUGGACGCGGAA.............................. 21 5.05 ...............................................................................................................................................................................CGGUUAAAGUUGGACGCGGA............................... 20 4.71 .................................................................................................................................................................................GUUAAAGUUGGACGCGGAAAACCA......................... 24 5.65 ....................................................................................................................................................................................AAAGUUGGACGCGGAAAACCAUGGC..................... 50 11.9 ....................................................................................................................................................................................AAAGUUGGACGCGGAAAACC.......................... 20 4.71 .....................................................................................................................................................................................AAGUUGGACGCGGAAAACCAUGGC..................... 48 11.4 ......................................................................................................................................................................................AGUUGGACGCGGAAAACCAUGGCU.................... 48 11.4 ......................................................................................................................................................................................AGUUGGACGCGGAAAACCAUGGC..................... 23 5.42 .......................................................................................................................................................................................GUUGGACGCGGAAAACCAUGGCUA................... 48 11.4 .......................................................................................................................................................................................GUUGGACGCGGAAAACCAUGGC..................... 22 5.18 ........................................................................................................................................................................................UUGGACGCGGAAAACCAUGGCUAC.................. 48 11.4 ........................................................................................................................................................................................UUGGACGCGGAAAACCAUGGCU.................... 22 5.29 ........................................................................................................................................................................................UUGGACGCGGAAAACCAUGGC..................... 21 4.95 ........................................................................................................................................................................................UUGGACGCGGAAAACCAU........................ 18 4.24 ..............................................................................................................................................................................................GCGGAAAACCAUGGCUACACUUAU............ 24 5.65 ................................................................................................................................................................................................GGAAAACCAUGGCUACACUUAUUU.......... 24 5.77 ................................................................................................................................................................................................GGAAAACCAUGGCUACACUUAUU........... 23 5.42 ..................................................................................................................................................................................................AAAACCAUGGCUACACUUAUUUUG........ 48 11.4 ..................................................................................................................................................................................................AAAACCAUGGCUACACUUAUUUU......... 23 5.42 ............................................................................................................................................................................................................CUACACUUAUUUUGAGACGGA. 21 5.05 CUCCGUUUCAUAAUAAGUGCAGCCAUGAGUUUCCGCGCUCAAUUUUGAUCGUCCGUCUUAUUUGAAAUUUUUUUAUAAUUAGCAUUUUUGUUGUUAUGAGAUGAUAAAACAUGAAUAGUACUUUACUUGUGACUUAUGUUUUUAAAUUUUUUCAAAAAAUUUUUAAUAAGACGAACGGUUAAAGUUGGACGCGGAAAACCAUGGCUACACUUAUUUUGAGACGGAG ((((((((((.((((((((.(((((((..((((((((..(((((((((((((.(((((((((.((((((((((......(((((....)))))....(((((...(((((((((....(((.......)))..)))))))))...)))))...)))))))))).))))))))).)))))))))))))..))))))))..))))))).)))))))).)))))))))) (-99.50)

                                                                                                                                                                              osa-miR812k                                           Count     RPM (mean number of reads per million)
..........UAAUAAGUGCAGCCAUGAGUUUCC................................................................................................................................................................................................  48        11.4
..........UAAUAAGUGCAGCCAUGAGU....................................................................................................................................................................................................  20        4.81
............AUAAGUGCAGCCAUGAGUUUCCGC..............................................................................................................................................................................................  48        11.4
.............UAAGUGCAGCCAUGAGUUUCC................................................................................................................................................................................................  1         11.8
..............AAGUGCAGCCAUGAGUUUCCGCGC............................................................................................................................................................................................  48        11.4
..............AAGUGCAGCCAUGAGUUUCC................................................................................................................................................................................................  20        4.81
...............AGUGCAGCCAUGAGUUUCCGCGCU...........................................................................................................................................................................................  24        5.65
.................UGCAGCCAUGAGUUUCCGCGC............................................................................................................................................................................................  21        5.05
...................CAGCCAUGAGUUUCCGCGCUCAAU.......................................................................................................................................................................................  24        5.77
...........................AGUUUCCGCGCUCAAUUUUGAUCG...............................................................................................................................................................................  24        5.77
..............................UUCCGCGCUCAAUUUUGAUCGUCC............................................................................................................................................................................  48        11.4
..............................UUCCGCGCUCAAUUUUGAUCG...............................................................................................................................................................................  21        5.05
.................................CGCGCUCAAUUUUGAUCGUCCGU..........................................................................................................................................................................  23        5.53
..................................GCGCUCAAUUUUGAUCGUCCGUCU........................................................................................................................................................................  48        11.4
..................................GCGCUCAAUUUUGAUCGUCCGU..........................................................................................................................................................................  44        10.5
..................................GCGCUCAAUUUUGAUCGUCCGUC.........................................................................................................................................................................  23        5.42
..................................GCGCUCAAUUUUGAUCGUCCG...........................................................................................................................................................................  21        4.95
....................................GCUCAAUUUUGAUCGUCCGUCUUA......................................................................................................................................................................  24        5.77
....................................GCUCAAUUUUGAUCGUCCGUCU........................................................................................................................................................................  22        5.29
......................................UCAAUUUUGAUCGUCCGU..........................................................................................................................................................................  36        8.57
......................................UCAAUUUUGAUCGUCCGUCUUA......................................................................................................................................................................  22        5.29
.......................................CAAUUUUGAUCGUCCGUCUUA......................................................................................................................................................................  42        9.99
.......................................CAAUUUUGAUCGUCCGUCUU.......................................................................................................................................................................  20        4.71
........................................AAUUUUGAUCGUCCGUCUUAUUU...................................................................................................................................................................  46        10.9
...............................................................................................AUGAGAUGAUAAAACAUGAAUAGU...........................................................................................................  48        11.4
................................................................................................UGAGAUGAUAAAACAUGAAUAGU...........................................................................................................  23        5.42
......................................................................................................GAUAAAACAUGAAUAGUACUUUA.....................................................................................................  23        5.42
...........................................................................................................................................................AAAAUUUUUAAUAAGACGAACGGU...............................................  24        5.65
............................................................................................................................................................AAAUUUUUAAUAAGACGAACGGU...............................................  23        5.42
.............................................................................................................................................................AAUUUUUAAUAAGACGAACGGUUA.............................................  24        5.65
...............................................................................................................................................................UUUUUAAUAAGACGAACGGUU..............................................  21        5.05
................................................................................................................................................................UUUUAAUAAGACGAACGGUUAAAG..........................................  24        5.65
................................................................................................................................................................UUUUAAUAAGACGAACGGUUAA............................................  22        5.29
....................................................................................................................................................................AAUAAGACGAACGGUUAAAGUUGG......................................  48        11.4
....................................................................................................................................................................AAUAAGACGAACGGUUAAAGUUG.......................................  23        5.42
....................................................................................................................................................................AAUAAGACGAACGGUUAAAGUU........................................  22        5.18
.....................................................................................................................................................................AUAAGACGAACGGUUAAAGUUGGA.....................................  48        11.4
......................................................................................................................................................................UAAGACGAACGGUUAAAGUUGGAC....................................  24        5.65
.......................................................................................................................................................................AAGACGAACGGUUAAAGUUGGACG...................................  48        11.4
.......................................................................................................................................................................AAGACGAACGGUUAAAGUUG.......................................  40        9.52
.......................................................................................................................................................................AAGACGAACGGUUAAAGUUGGA.....................................  22        5.18
.......................................................................................................................................................................AAGACGAACGGUUAAAGUUGG......................................  21        4.95
.......................................................................................................................................................................AAGACGAACGGUUAAAGUU........................................  19        4.48
.......................................................................................................................................................................AAGACGAACGGUUAAAGU.........................................  18        4.32
........................................................................................................................................................................AGACGAACGGUUAAAGUUGGACGC..................................  48        11.4
........................................................................................................................................................................AGACGAACGGUUAAAGUUGGACG...................................  23        5.53
.........................................................................................................................................................................GACGAACGGUUAAAGUUGGACGCGG................................  50        11.9
.........................................................................................................................................................................GACGAACGGUUAAAGUUGGACGCG.................................  48        11.4
.........................................................................................................................................................................GACGAACGGUUAAAGUUGGACGCGGA...............................  26        6.13
.........................................................................................................................................................................GACGAACGGUUAAAGUUGGACGC..................................  23        5.42
..........................................................................................................................................................................ACGAACGGUUAAAGUUGGACGCGGA...............................  50        11.9
..........................................................................................................................................................................ACGAACGGUUAAAGUUGGACGCGG................................  48        11.4
..........................................................................................................................................................................ACGAACGGUUAAAGUUGGACGCG.................................  46        10.9
..........................................................................................................................................................................ACGAACGGUUAAAGUUGGACGC..................................  44        10.5
..........................................................................................................................................................................ACGAACGGUUAAAGUUGGAC....................................  20        4.81
...........................................................................................................................................................................CGAACGGUUAAAGUUGGACGCGGA...............................  48        11.4
...........................................................................................................................................................................CGAACGGUUAAAGUUGGACGCGG................................  46        10.9
............................................................................................................................................................................GAACGGUUAAAGUUGGACGCGGAA..............................  48        11.4
............................................................................................................................................................................GAACGGUUAAAGUUGGACGCGG................................  44        10.5
............................................................................................................................................................................GAACGGUUAAAGUUGGACG...................................  19        4.57
.............................................................................................................................................................................AACGGUUAAAGUUGGACGCGGAAA.............................  48        11.4
.............................................................................................................................................................................AACGGUUAAAGUUGGACGCGGAAAA............................  25        6.01
.............................................................................................................................................................................AACGGUUAAAGUUGGACGCGGAA..............................  23        5.53
.............................................................................................................................................................................AACGGUUAAAGUUGGACGCGG................................  21        5.05
..............................................................................................................................................................................ACGGUUAAAGUUGGACGCGGAAAA............................  48        11.4
..............................................................................................................................................................................ACGGUUAAAGUUGGACGCGGAAAAC...........................  25        6.01
..............................................................................................................................................................................ACGGUUAAAGUUGGACGCGG................................  20        4.71
...............................................................................................................................................................................CGGUUAAAGUUGGACGCGGAAAAC...........................  48        11.4
...............................................................................................................................................................................CGGUUAAAGUUGGACGCGGAAAA............................  23        5.42
...............................................................................................................................................................................CGGUUAAAGUUGGACGCGGAA..............................  21        5.05
...............................................................................................................................................................................CGGUUAAAGUUGGACGCGGA...............................  20        4.71
.................................................................................................................................................................................GUUAAAGUUGGACGCGGAAAACCA.........................  24        5.65
....................................................................................................................................................................................AAAGUUGGACGCGGAAAACCAUGGC.....................  50        11.9
....................................................................................................................................................................................AAAGUUGGACGCGGAAAACC..........................  20        4.71
.....................................................................................................................................................................................AAGUUGGACGCGGAAAACCAUGGC.....................  48        11.4
......................................................................................................................................................................................AGUUGGACGCGGAAAACCAUGGCU....................  48        11.4
......................................................................................................................................................................................AGUUGGACGCGGAAAACCAUGGC.....................  23        5.42
.......................................................................................................................................................................................GUUGGACGCGGAAAACCAUGGCUA...................  48        11.4
.......................................................................................................................................................................................GUUGGACGCGGAAAACCAUGGC.....................  22        5.18
........................................................................................................................................................................................UUGGACGCGGAAAACCAUGGCUAC..................  48        11.4
........................................................................................................................................................................................UUGGACGCGGAAAACCAUGGCU....................  22        5.29
........................................................................................................................................................................................UUGGACGCGGAAAACCAUGGC.....................  21        4.95
........................................................................................................................................................................................UUGGACGCGGAAAACCAU........................  18        4.24
..............................................................................................................................................................................................GCGGAAAACCAUGGCUACACUUAU............  24        5.65
................................................................................................................................................................................................GGAAAACCAUGGCUACACUUAUUU..........  24        5.77
................................................................................................................................................................................................GGAAAACCAUGGCUACACUUAUU...........  23        5.42
..................................................................................................................................................................................................AAAACCAUGGCUACACUUAUUUUG........  48        11.4
..................................................................................................................................................................................................AAAACCAUGGCUACACUUAUUUU.........  23        5.42
............................................................................................................................................................................................................CUACACUUAUUUUGAGACGGA.  21        5.05
CUCCGUUUCAUAAUAAGUGCAGCCAUGAGUUUCCGCGCUCAAUUUUGAUCGUCCGUCUUAUUUGAAAUUUUUUUAUAAUUAGCAUUUUUGUUGUUAUGAGAUGAUAAAACAUGAAUAGUACUUUACUUGUGACUUAUGUUUUUAAAUUUUUUCAAAAAAUUUUUAAUAAGACGAACGGUUAAAGUUGGACGCGGAAAACCAUGGCUACACUUAUUUUGAGACGGAG
((((((((((.((((((((.(((((((..((((((((..(((((((((((((.(((((((((.((((((((((......(((((....)))))....(((((...(((((((((....(((.......)))..)))))))))...)))))...)))))))))).))))))))).)))))))))))))..))))))))..))))))).)))))))).)))))))))) (-99.50)

miRBase

Deep sequencing reads for mature sequence MIMAT0019666

Filter reads

References

References
1	PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).
2	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).