Deep sequencing reads for mature sequence MIMAT0019127

Stem-loop ID tca-mir-283
Mature ID tca-miR-283-3p
Reads
         tca-miR-283-5p                      tca-miR-283-3p                   Count     RPM (mean number of reads per million)
..........AAAUAUCAGCUGGUAAUUCUG.............................................  180       39.7
..........AAAUAUCAGCUGGUAAUUCUGG............................................  150       35.8
..........AAAUAUCAGCUGGUAAUUCUGGG...........................................  140       18.1
..........AAAUAUCAGCUGGUAAUUC...............................................  56        7.22
..........AAAUAUCAGCUGGUAAUU................................................  44        13.9
..........AAAUAUCAGCUGGUAAUUCU..............................................  34        4.38
..........AAAUAUCAGCUGGUAAUUCUGGGU..........................................  6         0.774
..........AAAUAUCAGCUGGUAAUUCUGGGUUG........................................  2         0.258
............AUAUCAGCUGGUAAUUCUGG............................................  8         1.03
............AUAUCAGCUGGUAAUUCUGGG...........................................  6         0.774
............AUAUCAGCUGGUAAUUCUG.............................................  4         0.516
..............AUCAGCUGGUAAUUCUGGG...........................................  14        1.81
..............AUCAGCUGGUAAUUCUGGGUU.........................................  2         0.258
..............AUCAGCUGGUAAUUCUGG............................................  2         0.258
...............UCAGCUGGUAAUUCUGGG...........................................  2         0.258
.............................................CAGAAUAUCGACUGAUAU.............  2         0.258
GUUGUCUGUGAAAUAUCAGCUGGUAAUUCUGGGUUGAUGAGAUCCCAGAAUAUCGACUGAUAUUAUCAUAAACAAC
(((((.(((((((((((((.(((((.(((((((..........)))))))))))).)))))))).))))).))))) (-31.60)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000199 1962adult GEO : GSM639446 genotype: wild type, gender: male and female [ Marco A et al.]
ER0000000200 36embryo GEO : GSM639447 genotype: wild type, age: 0-5 days, gender: male and female [ Marco A et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).