Deep sequencing reads for mature sequence MIMAT0019103

Stem-loop ID tca-mir-13a
Mature ID tca-miR-13a-5p
Reads
            tca-miR-13a-5p                     tca-miR-13a-3p                      Count     RPM (mean number of reads per million)
............UCGUCAAUUUGGUUGUGAACUC..............................................  86        11.1
............UCGUCAAUUUGGUUGUGA..................................................  54        31.7
............UCGUCAAUUUGGUUGUGAAC................................................  20        35.6
............UCGUCAAUUUGGUUGUGAACU...............................................  12        1.55
............UCGUCAAUUUGGUUGUGAA.................................................  10        9.53
............UCGUCAAUUUGGUUGUGAACUCU.............................................  8         1.03
.............CGUCAAUUUGGUUGUGAACUC..............................................  2         0.258
.............CGUCAAUUUGGUUGUGAAC................................................  2         0.258
..............GUCAAUUUGGUUGUGAACUC..............................................  2         0.258
...................................UAAUUUAAACGAUAUCACAGCCACUU...................  2         0.258
.....................................AUUUAAACGAUAUCACAGCCACU....................  2         0.258
..............................................AUAUCACAGCCACUUUGAUGAGC...........  2         0.258
...............................................UAUCACAGCCACUUUGAUGAGC...........  2728      385
...............................................UAUCACAGCCACUUUGAUG..............  1254      417
...............................................UAUCACAGCCACUUUGAUGA.............  1010      1.31e+03
...............................................UAUCACAGCCACUUUGAUGAG............  914       118
...............................................UAUCACAGCCACUUUGAUGAGCU..........  678       95.7
...............................................UAUCACAGCCACUUUGAU...............  556       179
...............................................UAUCACAGCCACUUUGAUGAGCUU.........  110       14.2
...............................................UAUCACAGCCACUUUGAUGAGCUUG........  22        2.84
...............................................UAUCACAGCCACUUUGAUGAGCUUGG.......  6         0.774
................................................AUCACAGCCACUUUGAUGAGC...........  198       50.3
................................................AUCACAGCCACUUUGAUG..............  84        35.6
................................................AUCACAGCCACUUUGAUGAG............  82        18.8
................................................AUCACAGCCACUUUGAUGAGCU..........  66        8.51
................................................AUCACAGCCACUUUGAUGA.............  58        7.48
................................................AUCACAGCCACUUUGAUGAGCUU.........  10        1.29
.................................................UCACAGCCACUUUGAUGAGCU..........  16        10.3
.................................................UCACAGCCACUUUGAUGAGC...........  10        17.8
.................................................UCACAGCCACUUUGAUGA.............  6         25.5
.................................................UCACAGCCACUUUGAUGAGCUUG........  2         8.5
..................................................CACAGCCACUUUGAUGAGC...........  2         0.258
..................................................CACAGCCACUUUGAUGAGCUU.........  2         0.258
...................................................ACAGCCACUUUGAUGAGC...........  8         9.27
...................................................ACAGCCACUUUGAUGAGCU..........  8         1.03
GAGAUGCCCAAGUCGUCAAUUUGGUUGUGAACUCUUAAUUUAAACGAUAUCACAGCCACUUUGAUGAGCUUGGUUGUCUU
(((((..((((((((((((..(((((((((..((...........))..)))))))))..))))))).)))))..))))) (-33.70)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000199 28266adult GEO : GSM639446 genotype: wild type, gender: male and female [ Marco A et al.]
ER0000000200 874embryo GEO : GSM639447 genotype: wild type, age: 0-5 days, gender: male and female [ Marco A et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).