Deep sequencing reads for mature sequence MIMAT0018836

Stem-loop ID

tca-mir-3872

Mature ID

tca-miR-3872-5p

Reads

  tca-miR-3872-5p                                                 tca-miR-3872-3p               Count     RPM (mean number of reads per million)
.UGAAGUGAUCUACAGCCAGAAAUGCA..................................................................  30        12.1
.UGAAGUGAUCUACAGCCAGAAAUGC...................................................................  2         0.258
...........UACAGCCAGAAAUGCAUUAUUAUGCU........................................................  2         0.258
...............GCCAGAAAUGCAUUAUUAUGCUCUGC....................................................  2         0.258
...............................................................UUUGCAUUUUUUACUAAUUGUU........  2         0.258
GUGAAGUGAUCUACAGCCAGAAAUGCAUUAUUAUGCUCUGCGAAGUAAGUGCAUAUCUUAAUUUUUGCAUUUUUUACUAAUUGUUCAUGCUCA
.(((.((((.(...((..((((((((((((.(((((.((........)).)))))...)))....)))))))))..))....).))))..))) (-17.90)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000199	58	adult	GEO : GSM639446	genotype: wild type, gender: male and female	[ Marco A et al.]
ER0000000200	4	embryo	GEO : GSM639447	genotype: wild type, age: 0-5 days, gender: male and female	[ Marco A et al.]

References

1. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).