Deep sequencing reads for mature sequence MIMAT0018831

Stem-loop ID tca-mir-3869
Mature ID tca-miR-3869-3p
Reads
     tca-miR-3869-5p                          tca-miR-3869-3p             Count     RPM (mean number of reads per million)
.....ACUGAUAGAUGGUCUCGAAAAGCC...........................................  22        2.84
.....ACUGAUAGAUGGUCUCGAAAAGCCUU.........................................  8         1.03
.....ACUGAUAGAUGGUCUCGAAAA..............................................  6         0.774
.....ACUGAUAGAUGGUCUCGAAAAGCCU..........................................  6         0.774
.....ACUGAUAGAUGGUCUCGAAAAGC............................................  4         0.516
.....ACUGAUAGAUGGUCUCGAA................................................  4         0.516
.....ACUGAUAGAUGGUCUCGAAA...............................................  2         0.258
.....ACUGAUAGAUGGUCUCGA.................................................  2         0.258
........GAUAGAUGGUCUCGAAAAGCCUU.........................................  2         0.258
..........UAGAUGGUCUCGAAAAGCCUUAUAGC....................................  2         0.258
......................AAAAGCCUUAUAGCGAUGUUGGGGGC........................  4         0.516
.......................AAAGCCUUAUAGCGAUGUUGGGGGC........................  2         0.258
.......................AAAGCCUUAUAGCGAUGUUGGGG..........................  2         0.258
........................AAGCCUUAUAGCGAUGUUGGGGGCAU......................  2         0.258
........................AAGCCUUAUAGCGAUGUUGGGGG.........................  2         0.258
.........................AGCCUUAUAGCGAUGUUGG............................  2         0.258
.........................AGCCUUAUAGCGAUGUUGGGGG.........................  2         0.258
.............................UUAUAGCGAUGUUGGGGG.........................  36        4.64
.............................UUAUAGCGAUGUUGGGGGCAUUCGAG.................  2         0.258
..............................UAUAGCGAUGUUGGGGGCAUUCGAG.................  6         0.774
..............................UAUAGCGAUGUUGGGGGC........................  4         0.516
..............................UAUAGCGAUGUUGGGGGCA.......................  2         0.258
.................................AGCGAUGUUGGGGGCAUUCGA..................  2         0.258
.................................AGCGAUGUUGGGGGCAUUC....................  2         0.258
..................................GCGAUGUUGGGGGCAUUCGAGACCCC............  4         0.516
..................................GCGAUGUUGGGGGCAUUC....................  2         0.258
...................................CGAUGUUGGGGGCAUUCGAGACCCCU...........  4         0.516
....................................GAUGUUGGGGGCAUUCGAGACCCCUG..........  6         0.774
.....................................AUGUUGGGGGCAUUCGAGACCCCUGU.........  18        2.32
.....................................AUGUUGGGGGCAUUCGAGACCCC............  2         0.258
.....................................AUGUUGGGGGCAUUCGAGACCCCUG..........  2         0.258
......................................UGUUGGGGGCAUUCGAGACCCCUGUU........  2         0.258
......................................UGUUGGGGGCAUUCGAGACCCCUGU.........  2         0.258
.......................................GUUGGGGGCAUUCGAGACCC.............  2         0.258
.......................................GUUGGGGGCAUUCGAGACCCCUGUUA.......  2         0.258
.......................................GUUGGGGGCAUUCGAGACCCCUGUU........  2         0.258
.........................................UGGGGGCAUUCGAGACCCCUG..........  2         0.258
.............................................GGCAUUCGAGACCCCUGUUAGU.....  2         0.258
..............................................GCAUUCGAGACCCCUGUUAGU.....  8         1.03
..............................................GCAUUCGAGACCCCUGUUA.......  6         0.774
..............................................GCAUUCGAGACCCCUGUUAG......  4         0.516
..............................................GCAUUCGAGACCCCUGUUAGUUAC..  2         0.258
..............................................GCAUUCGAGACCCCUGUUAGUU....  2         0.258
..............................................GCAUUCGAGACCCCUGUUAGUUACCU  2         0.258
..............................................GCAUUCGAGACCCCUGUU........  2         0.258
...............................................CAUUCGAGACCCCUGUUAGUUAC..  8012      1.03e+03
...............................................CAUUCGAGACCCCUGUUAGU.....  4146      559
...............................................CAUUCGAGACCCCUGUUAG......  2618      362
...............................................CAUUCGAGACCCCUGUUAGUU....  2106      296
...............................................CAUUCGAGACCCCUGUUA.......  1676      224
...............................................CAUUCGAGACCCCUGUUAGUUA...  818       105
...............................................CAUUCGAGACCCCUGUUAGUUACC.  598       77.1
................................................AUUCGAGACCCCUGUUAGUUAC..  154       19.9
................................................AUUCGAGACCCCUGUUAG......  58        7.48
................................................AUUCGAGACCCCUGUUAGU.....  46        5.93
................................................AUUCGAGACCCCUGUUAGUU....  42        5.42
................................................AUUCGAGACCCCUGUUAGUUACC.  12        1.55
................................................AUUCGAGACCCCUGUUAGUUA...  8         1.03
.................................................UUCGAGACCCCUGUUAGUUAC..  46        5.93
.................................................UUCGAGACCCCUGUUAGU.....  22        2.84
.................................................UUCGAGACCCCUGUUAGUUACC.  6         0.774
.................................................UUCGAGACCCCUGUUAGUU....  4         0.516
.................................................UUCGAGACCCCUGUUAGUUA...  2         0.258
..................................................UCGAGACCCCUGUUAGUUAC..  6         0.774
..................................................UCGAGACCCCUGUUAGUU....  2         0.258
...................................................CGAGACCCCUGUUAGUUAC..  12        1.55
...................................................CGAGACCCCUGUUAGUUA...  4         0.516
...................................................CGAGACCCCUGUUAGUUACC.  4         0.516
....................................................GAGACCCCUGUUAGUUACC.  2         0.258
....................................................GAGACCCCUGUUAGUUAC..  2         0.258
UAAUUACUGAUAGAUGGUCUCGAAAAGCCUUAUAGCGAUGUUGGGGGCAUUCGAGACCCCUGUUAGUUACCU
.....((((((((..(((((((((..(((((.((((...))))))))).))))))))).))))))))..... (-28.00)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000199 44310adult GEO : GSM639446 genotype: wild type, gender: male and female [ Marco A et al.]
ER0000000200 38embryo GEO : GSM639447 genotype: wild type, age: 0-5 days, gender: male and female [ Marco A et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).